CN184780

Overview
NameCN184780
Unique NameCN184780
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN184780_ssr41 microsatellite CN184780_ssr41:41..55. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN184780 vs. ExPASy Swiss-Prot
Match: PIP21_MAIZE (Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.361e-27
Identity = 56/74 (75.68%), Postives = 65/74 (87.84%), Query Frame = -3
Query:  364 PLDFAVFMVHLATIPITGTGH*PSKGVSGAAVIYNKDKAWDDQWLFWVGPFIGAAIAALYHQFILRAGAVKALG 585
            P+ FAVFMVHLATIP+TGTG  P++ + GAAVIYNKDK WDD W+FWVGP +GAAIAA YHQ+ILRAGA+KALG
Sbjct:  212 PIGFAVFMVHLATIPVTGTGINPARSL-GAAVIYNKDKPWDDHWIFWVGPLVGAAIAAFYHQYILRAGAIKALG 284          
BLAST of CN184780 vs. ExPASy Swiss-Prot
Match: PIP25_ARATH (Probable aquaporin PIP2-5 OS=Arabidopsis thaliana GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.321e-27
Identity = 56/74 (75.68%), Postives = 65/74 (87.84%), Query Frame = -3
Query:  364 PLDFAVFMVHLATIPITGTGH*PSKGVSGAAVIYNKDKAWDDQWLFWVGPFIGAAIAALYHQFILRAGAVKALG 585
            P+ FAVF+VHLATIPITGTG  P++ + GAA+IYNKDKAWD  W+FWVGPF GAAIAA YHQF+LRAGA+KALG
Sbjct:  206 PIGFAVFIVHLATIPITGTGINPARSL-GAAIIYNKDKAWDHHWIFWVGPFAGAAIAAFYHQFVLRAGAIKALG 278          
BLAST of CN184780 vs. ExPASy Swiss-Prot
Match: PIP22_MAIZE (Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.321e-27
Identity = 55/74 (74.32%), Postives = 65/74 (87.84%), Query Frame = -3
Query:  364 PLDFAVFMVHLATIPITGTGH*PSKGVSGAAVIYNKDKAWDDQWLFWVGPFIGAAIAALYHQFILRAGAVKALG 585
            P+ FAVFMVHLATIP+TGTG  P++ + GAAV+YNKDK WDD W+FWVGP +GAAIAA YHQ+ILRAGA+KALG
Sbjct:  214 PIGFAVFMVHLATIPVTGTGINPARSL-GAAVVYNKDKPWDDHWIFWVGPLLGAAIAAFYHQYILRAGAIKALG 286          
BLAST of CN184780 vs. ExPASy Swiss-Prot
Match: PIP26_ARATH (Probable aquaporin PIP2-6 OS=Arabidopsis thaliana GN=PIP2-6 PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.960e-27
Identity = 56/74 (75.68%), Postives = 64/74 (86.49%), Query Frame = -3
Query:  364 PLDFAVFMVHLATIPITGTGH*PSKGVSGAAVIYNKDKAWDDQWLFWVGPFIGAAIAALYHQFILRAGAVKALG 585
            P+ F+VFMVHLATIPITGTG  P++   GAAVIYN  KAWDDQW+FWVGPF+GAAIAA YHQF+LRAGA+KA G
Sbjct:  206 PIGFSVFMVHLATIPITGTGINPARSF-GAAVIYNNQKAWDDQWIFWVGPFVGAAIAAFYHQFVLRAGAMKAYG 278          
BLAST of CN184780 vs. ExPASy Swiss-Prot
Match: PIP24_ARATH (Probable aquaporin PIP2-4 OS=Arabidopsis thaliana GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.821e-27
Identity = 57/74 (77.03%), Postives = 63/74 (85.14%), Query Frame = -3
Query:  364 PLDFAVFMVHLATIPITGTGH*PSKGVSGAAVIYNKDKAWDDQWLFWVGPFIGAAIAALYHQFILRAGAVKALG 585
            P+ FAVFMVHLATIPITGTG  P++   GAAVIYN +KAWDDQW+FWVGP IGAA AA YHQFILRA A+KALG
Sbjct:  207 PIGFAVFMVHLATIPITGTGINPARSF-GAAVIYNNEKAWDDQWIFWVGPMIGAAAAAFYHQFILRAAAIKALG 279          
BLAST of CN184780 vs. ExPASy Swiss-Prot
Match: PIP21_ORYSJ (Probable aquaporin PIP2-1 OS=Oryza sativa subsp. japonica GN=PIP2-1 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.567e-26
Identity = 54/74 (72.97%), Postives = 65/74 (87.84%), Query Frame = -3
Query:  364 PLDFAVFMVHLATIPITGTGH*PSKGVSGAAVIYNKDKAWDDQWLFWVGPFIGAAIAALYHQFILRAGAVKALG 585
            P+ FAVFMVHLATIPITGTG  P++ + GAAVI+N +KAW + W+FWVGPF+GAAIAA YHQ+ILRAGA+KALG
Sbjct:  212 PIGFAVFMVHLATIPITGTGINPARSI-GAAVIFNNEKAWHNHWIFWVGPFVGAAIAAFYHQYILRAGAIKALG 284          
BLAST of CN184780 vs. ExPASy Swiss-Prot
Match: PIP27_MAIZE (Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.352e-26
Identity = 52/74 (70.27%), Postives = 64/74 (86.49%), Query Frame = -3
Query:  364 PLDFAVFMVHLATIPITGTGH*PSKGVSGAAVIYNKDKAWDDQWLFWVGPFIGAAIAALYHQFILRAGAVKALG 585
            P+ FAVFMVHLATIP+TGTG  P++   G AVI+N DKAWDDQW++WVGPF+GAA+AA+YHQ+ILR  A+KALG
Sbjct:  209 PIGFAVFMVHLATIPVTGTGINPARSF-GPAVIFNNDKAWDDQWIYWVGPFVGAAVAAIYHQYILRGSAIKALG 281          
BLAST of CN184780 vs. ExPASy Swiss-Prot
Match: PIP27_ARATH (Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7 PE=1 SV=2)

HSP 1 Score: 118.242 bits (295), Expect = 3.352e-26
Identity = 55/74 (74.32%), Postives = 63/74 (85.14%), Query Frame = -3
Query:  364 PLDFAVFMVHLATIPITGTGH*PSKGVSGAAVIYNKDKAWDDQWLFWVGPFIGAAIAALYHQFILRAGAVKALG 585
            P+ FAVFMVHLATIPITGTG  P++   GAAVIYN +KAWDDQW+FWVGPF+GA  AA YHQ+ILRA A+KALG
Sbjct:  200 PIGFAVFMVHLATIPITGTGINPARSF-GAAVIYNNEKAWDDQWIFWVGPFLGALAAAAYHQYILRASAIKALG 272          
BLAST of CN184780 vs. ExPASy Swiss-Prot
Match: PIP24_MAIZE (Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.378e-26
Identity = 55/71 (77.46%), Postives = 62/71 (87.32%), Query Frame = -3
Query:  373 PLDFAVFMVHLATIPITGTGH*PSKGVSGAAVIYNKDKAWDDQWLFWVGPFIGAAIAALYHQFILRAGAVK 585
            P+ FAVFMVHLATIPITGTG  P++ + GAAVIYNKDKAWDDQW+FWVGP IGAAIAA YHQ++LRA A K
Sbjct:  211 PIGFAVFMVHLATIPITGTGINPARSL-GAAVIYNKDKAWDDQWIFWVGPLIGAAIAAAYHQYVLRASATK 280          
BLAST of CN184780 vs. ExPASy Swiss-Prot
Match: PIP23_MAIZE (Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.378e-26
Identity = 55/71 (77.46%), Postives = 62/71 (87.32%), Query Frame = -3
Query:  373 PLDFAVFMVHLATIPITGTGH*PSKGVSGAAVIYNKDKAWDDQWLFWVGPFIGAAIAALYHQFILRAGAVK 585
            P+ FAVFMVHLATIPITGTG  P++ + GAAVIYNKDKAWDDQW+FWVGP IGAAIAA YHQ++LRA A K
Sbjct:  212 PIGFAVFMVHLATIPITGTGINPARSL-GAAVIYNKDKAWDDQWIFWVGPLIGAAIAAAYHQYVLRASATK 281          
The following BLAST results are available for this feature:
BLAST of CN184780 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
PIP21_MAIZE1.361e-2775.68Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2[more]
PIP25_ARATH2.321e-2775.68Probable aquaporin PIP2-5 OS=Arabidopsis thaliana ... [more]
PIP22_MAIZE2.321e-2774.32Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1[more]
PIP26_ARATH3.960e-2775.68Probable aquaporin PIP2-6 OS=Arabidopsis thaliana ... [more]
PIP24_ARATH8.821e-2777.03Probable aquaporin PIP2-4 OS=Arabidopsis thaliana ... [more]
PIP21_ORYSJ2.567e-2672.97Probable aquaporin PIP2-1 OS=Oryza sativa subsp. j... [more]
PIP27_MAIZE3.352e-2670.27Aquaporin PIP2-7 OS=Zea mays GN=PIP2-7 PE=2 SV=1[more]
PIP27_ARATH3.352e-2674.32Aquaporin PIP2-7 OS=Arabidopsis thaliana GN=PIP2-7... [more]
PIP24_MAIZE4.378e-2677.46Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1[more]
PIP23_MAIZE4.378e-2677.46Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006B12_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184780 ID=CN184780; Name=CN184780; organism=Citrus sinensis; type=EST; length=626bp
CCGAGGGCTAATAATTTTTTTTTTTTCCTTAAAGCACAACAATAATAATA
ATAATCCCATACGGTGAAAATAATACAAAGTAGAAAGAGACTGAACATTG
AAGAAGTGAATTCTAAGGAAAGTGCTTGAAAACAACAGAGGGGATTACAA
AAAAGCAAGCCCCCTCATTGCCTAAGAAACTTTTTGCCTACAACTCCGTG
AAAGCACAAATCACACCCCCCCTCATTATTCACTTTTTGAAACTTAACAC
ACCTCTACTCCTTCCCAGTTTTTTCTTTCCCATTTTAAATCATTAACCCC
ATGAAGATGTGGATAATCCACTTGTCGAAACTAAAATCAAACACGGGATT
GGCTCCTGAATGAACCAAGAGCCTTGACAGCTCCAGCTCTCAAGATGAAT
TGGTGGTACAAAGCCGCAATTGCTGCACCGATGAAGGGTCCAACCCAGAA
GAGCCATTGATCATCCCAAGCCTTGTCCTTGTTGTAAATAACAGCGGCCC
CCGAGACTCCTTTGCTGGGTTAATGCCCAGTGCCAGTGATTGGGATTGTG
GCCAAGTGTACCATGAACACAGCAAAATCCAATGGGGGAGCGGTGCCAAA
ACGGGGACATGGGAGTCTCTGGCGCT
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