CN184767

Overview
NameCN184767
Unique NameCN184767
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length742
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184767 vs. ExPASy Swiss-Prot
Match: OPDA_HAEIN (Oligopeptidase A OS=Haemophilus influenzae GN=prlC PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.269e-22
Identity = 48/158 (30.38%), Postives = 93/158 (58.86%), Query Frame = 1
Query:  262 NPLLQDFEFPPFDVVKAEHVRPGIRALLKQLESDLDELERTVEPSWPKLVEPLEKIVDQLAVVWGMINHLKSVKDTPELRSAIEEVQPEKVKFQLRLGQSKPIYNAFKAIQESPEWNALSDARKRIVESQIKEAVLNGVSLEDDKREQFNKIEQELEK 735
            NPLL     PPF  +K EH+RP +  L++   + ++++ +    +W   + PL +  D+L   W  ++HL SVK++ ELR A +   P   ++   +GQ K +YNA+ A++ S E+   S A+K+ +E+ +++  L+G+ L ++K++++ +I   L +
Sbjct:    5 NPLLNIQGLPPFSQIKPEHIRPAVEKLIQDCRNTIEQVLKQPHFTWENFILPLTETNDRLNRAWSPVSHLNSVKNSTELREAYQTCLPLLSEYSTWVGQHKGLYNAYLALKNSAEFADYSIAQKKAIENSLRDFELSGIGLSEEKQQRYGEIVARLSE 162          
BLAST of CN184767 vs. ExPASy Swiss-Prot
Match: OPDA_SALTY (Oligopeptidase A OS=Salmonella typhimurium GN=prlC PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.615e-21
Identity = 50/159 (31.45%), Postives = 92/159 (57.86%), Query Frame = 1
Query:  262 NPLLQDFEFPPFDVVKAEHVRPGIRALLKQLESDLDELERTVEP-SWPKLVEPLEKIVDQLAVVWGMINHLKSVKDTPELRSAIEEVQPEKVKFQLRLGQSKPIYNAFKAIQESPEWNALSDARKRIVESQIKEAVLNGVSLEDDKREQFNKIEQELEK 735
            NPLL  F  PPF  +K EHV P +   L    + ++ +     P SW  L +PL +  D L  ++  I+HL SVK++PELR A E+  P   ++   +GQ + +YNA++ +++   +  L+ A+K+ V++ +++  L+G+ L  +K++++ +I   L +
Sbjct:    3 NPLLTSFSLPPFSAIKPEHVVPAVTKALADCRAAVEGVVAHGAPYSWENLCQPLAEADDVLGRIFSPISHLNSVKNSPELREAYEQTLPLLSEYSTWVGQHEGLYNAYRDLRDGDHYATLNTAQKKAVDNALRDFELSGIGLPKEKQQRYGEIATRLSE 161          
BLAST of CN184767 vs. ExPASy Swiss-Prot
Match: OPDA_ECOLI (Oligopeptidase A OS=Escherichia coli (strain K12) GN=prlC PE=3 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 9.937e-21
Identity = 47/159 (29.56%), Postives = 92/159 (57.86%), Query Frame = 1
Query:  262 NPLLQDFEFPPFDVVKAEHVRPGIRALLKQLESDLDELERTVEP-SWPKLVEPLEKIVDQLAVVWGMINHLKSVKDTPELRSAIEEVQPEKVKFQLRLGQSKPIYNAFKAIQESPEWNALSDARKRIVESQIKEAVLNGVSLEDDKREQFNKIEQELEK 735
            NPLL  FE PPF  +  EHV P +   L     +++ +     P +W  L +PL ++ D L  ++  ++HL SVK++PELR A E+  P   ++   +GQ + +Y A++ +++   +  L+ A+K+ V++ +++  L+G+ L  +K++++ +I   L +
Sbjct:    3 NPLLTPFELPPFSKILPEHVVPAVTKALNDCRENVERVVAQGAPYTWENLCQPLAEVDDVLGRIFSPVSHLNSVKNSPELREAYEQTLPLLSEYSTWVGQHEGLYKAYRDLRDGDHYATLNTAQKKAVDNALRDFELSGIGLPKEKQQRYGEIATRLSE 161          
The following BLAST results are available for this feature:
BLAST of CN184767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
OPDA_HAEIN5.269e-2230.38Oligopeptidase A OS=Haemophilus influenzae GN=prlC... [more]
OPDA_SALTY2.615e-2131.45Oligopeptidase A OS=Salmonella typhimurium GN=prlC... [more]
OPDA_ECOLI9.937e-2129.56Oligopeptidase A OS=Escherichia coli (strain K12) ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0006B02_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184767 ID=CN184767; Name=CN184767; organism=Citrus sinensis; type=EST; length=742bp
GAGGGTTTCTCGGTGTCGCGTTCAGTTCACCCAATATTAAGAAAGTCACC
AAAACGCATATCCCAATTGACCTCAAAACATTTACACAAATCCCAATCCT
GTCCTCTCTGGTCTTCTTCTTTCTCCTTTTGTCTCCAATCTCTTCACAAA
TCCAAAACGACCTCACTCTCTTTCTCTACTAGTTCTGCTTGCCCCCCTTC
TTCACTCTCTATGGCCGCCTCCGCGACTGCTTCTGCTGTTGATGACTTAT
CTCTCGAAGACAATCCGTTGTTGCAGGACTTTGAGTTTCCTCCTTTTGAT
GTCGTTAAGGCCGAGCATGTCAGGCCTGGGATTCGTGCTCTTTTGAAACA
ACTGGAAAGTGATTTGGATGAACTGGAGAGAACAGTGGAGCCGTCGTGGC
CAAAGTTGGTGGAGCCACTGGAGAAGATTGTAGATCAACTGGCTGTTGTT
TGGGGGATGATCAATCATCTGAAGTCTGTTAAGGACACTCCTGAGCTCCG
TTCTGCCATTGAAGAAGTCCAGCCAGAGAAAGTGAAGTTTCAGCTTCGTT
TGGGTCAAAGCAAACCCATCTACAATGCATTCAAAGCTATTCAAGAATCT
CCTGAATGGAATGCTTTGAGTGATGCTCGCAAACGTATAGTCGAATCACA
AATAAAGGAAGCGGTTCTCAACGGTGTCTCACTGGAAGATGATAAACGAG
AACAATTTAACAAGATTGAGCAGGAACTGGAAAAAACTATCT
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