DC887487

Overview
NameDC887487
Unique NameDC887487
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length662
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC887487_ssr60 microsatellite DC887487_ssr60:60..71. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9552 contig Csv1_Contig9552:866..1527. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887487 vs. ExPASy Swiss-Prot
Match: ODPB_STAPU (Pyruvate dehydrogenase E1 component subunit beta OS=Staurastrum punctulatum GN=pdhB PE=3 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 3.797e-71
Identity = 133/171 (77.78%), Postives = 150/171 (87.72%), Query Frame = -3
Query:  148 NAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLC 660
            NAKGL+K++IRSENPVILFEHVLLYNLKE IPD EY+  LE+AE+VRPG  +TILTYSRMR+HV+QA K+LV KGYDPE+IDI SLKP DL TI  SIKKTH+VLIVEECMRTGGIGASL A I E+  D+LDAPI+CLSSQDVPTPY+G LEE TV+QPAQIV AVEQLC
Sbjct:  153 NAKGLIKSSIRSENPVILFEHVLLYNLKETIPDNEYLVCLEKAEIVRPGTDITILTYSRMRHHVLQATKSLVYKGYDPEIIDIVSLKPVDLGTISTSIKKTHKVLIVEECMRTGGIGASLRATIMEHLFDFLDAPIMCLSSQDVPTPYSGPLEELTVIQPAQIVQAVEQLC 323          
BLAST of DC887487 vs. ExPASy Swiss-Prot
Match: ODPB_ZYGCR (Pyruvate dehydrogenase E1 component subunit beta OS=Zygnema circumcarinatum GN=pdhB PE=3 SV=2)

HSP 1 Score: 260.381 bits (664), Expect = 6.062e-69
Identity = 127/172 (73.84%), Postives = 151/172 (87.79%), Query Frame = -3
Query:  145 NAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLCQ 660
            NAKGL+K+AIRS+NP+ILFEHVLLYNLKE + +EEY+  LE+AE+VRPG  +TILTYSRMR++V+QA K+LV KGYDPE+IDI SLKPFDL TIG S+ KTH+VLIVEECMRTGGIGA+L AAI E+F DYLDAPI+CLSSQDVPTPY+  LEE TV+QP QI+  VEQLC+
Sbjct:  153 NAKGLIKSAIRSDNPIILFEHVLLYNLKEDLAEEEYLVCLEKAEVVRPGNDITILTYSRMRHNVLQATKSLVYKGYDPEIIDIVSLKPFDLGTIGASVCKTHKVLIVEECMRTGGIGATLRAAIMEHFFDYLDAPILCLSSQDVPTPYSSPLEELTVIQPNQIIQVVEQLCE 324          
BLAST of DC887487 vs. ExPASy Swiss-Prot
Match: ODPB_CHAGL (Pyruvate dehydrogenase E1 component subunit beta OS=Chaetosphaeridium globosum GN=pdhB PE=3 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 8.753e-68
Identity = 123/172 (71.51%), Postives = 148/172 (86.05%), Query Frame = -3
Query:  145 NAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQLCQ 660
            N KGL+K+AIR++NPVI FEHVLLYNL E + ++EY+  LE+AE+VRPG  +TILTYSRMR+HV+QAAK LVNKGYDPE+IDI SLKP D+ TI  S++KTH+VLIVEECMRTGGIGASL AAI E+  DYLDAPI CLSSQDVPTPY+G LEE TV+QP QI+ AVE++C+
Sbjct:  153 NGKGLLKSAIRNDNPVIFFEHVLLYNLNENLIEQEYLLCLEKAEVVRPGNDITILTYSRMRHHVLQAAKVLVNKGYDPEIIDILSLKPLDMGTISLSVRKTHKVLIVEECMRTGGIGASLRAAILEDLFDYLDAPIQCLSSQDVPTPYSGPLEELTVIQPNQIIQAVEEMCK 324          
BLAST of DC887487 vs. ExPASy Swiss-Prot
Match: ODPB_CHAVU (Pyruvate dehydrogenase E1 component subunit beta OS=Chara vulgaris GN=pdhB PE=3 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.636e-64
Identity = 116/170 (68.24%), Postives = 144/170 (84.71%), Query Frame = -3
Query:  151 NAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQL 660
            NAKGL+K+AIRS+NP+I FEHVLLYN+KE IP +EY+  LE+AE+VR G  +TILTYSRMRYHV+QAAKTL+ KGYDPE+IDI SLKP D+ TI  S++KTH+VLIVEECM+TGGIG +L +AI E+  D+LD PI+ LSSQDVPTPY G LE+ TV+QP+QIV A E++
Sbjct:  153 NAKGLIKSAIRSQNPIIFFEHVLLYNIKENIPQKEYLVPLEKAELVRSGNQITILTYSRMRYHVLQAAKTLIEKGYDPEIIDIISLKPLDMGTISTSLRKTHKVLIVEECMKTGGIGTTLKSAILESLFDFLDTPIMSLSSQDVPTPYNGFLEDLTVIQPSQIVEAAEKI 322          
BLAST of DC887487 vs. ExPASy Swiss-Prot
Match: ODPB_PORPU (Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra purpurea GN=pdhB PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.655e-58
Identity = 108/170 (63.53%), Postives = 138/170 (81.18%), Query Frame = -3
Query:  151 NAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQL 660
            NAKGL+K+AIR  NPV+ FEHVLLYNL+E IP++EY+  L++AE+VR G+ +TILTYSRMR+HV +A   L+N GYDPEV+D+ SLKP D+ +I  S+KKTHRVLIVEECM+T GIGA L A I E+  D LDAP+V LSSQD+PTPY G+LE+ TV+QP QI+ AV+ +
Sbjct:  153 NAKGLLKSAIRDNNPVVFFEHVLLYNLQEEIPEDEYLIPLDKAEVVRKGKDITILTYSRMRHHVTEALPLLLNDGYDPEVLDLISLKPLDIDSISVSVKKTHRVLIVEECMKTAGIGAELIAQINEHLFDELDAPVVRLSSQDIPTPYNGSLEQATVIQPHQIIDAVKNI 322          
BLAST of DC887487 vs. ExPASy Swiss-Prot
Match: ODPB_GRATL (Pyruvate dehydrogenase E1 component subunit beta OS=Gracilaria tenuistipitata var. liui GN=pdhB PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.655e-58
Identity = 108/170 (63.53%), Postives = 137/170 (80.59%), Query Frame = -3
Query:  151 NAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQL 660
            NAKGL+K+AIR  NPVI FEHVLLYNLK+ +P++EY   L++AE+VR G  VTILTYSRMR+HVMQA   LVN GY+PEVID+ SLKP D+ +I  S+ KTH+++IVEECM+TGGIGA + A I +N+ D+LDAPIV LSSQD+PTPY G LE+ TV+ P QI+ AV+ +
Sbjct:  153 NAKGLLKSAIRDNNPVIFFEHVLLYNLKDELPNDEYFLPLDKAELVRDGLDVTILTYSRMRHHVMQAVVDLVNDGYNPEVIDLISLKPLDITSIAQSLMKTHKLIIVEECMKTGGIGAEIIAQINDNYFDFLDAPIVRLSSQDIPTPYNGKLEKATVIYPQQIIEAVKSI 322          
BLAST of DC887487 vs. ExPASy Swiss-Prot
Match: ODPB_PORYE (Pyruvate dehydrogenase E1 component subunit beta OS=Porphyra yezoensis GN=pdhB PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 1.829e-57
Identity = 108/170 (63.53%), Postives = 134/170 (78.82%), Query Frame = -3
Query:  151 NAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQL 660
            NAKGL+K+AIR  NPV+ FEHVLLYNL+E IP EEY   L + E VR G+ +TILTYSRMR+HV+QA   L+ +GYDPEVID+ SLKP D+ +I  S+KKTH+VLIVEECM+T GIGA L A I E   D LDAP+V LSSQD+PTPY G+LE+ TV+QP+QIV +V+ +
Sbjct:  153 NAKGLLKSAIRDNNPVVFFEHVLLYNLQEEIPQEEYFLPLNKVEFVRKGKDITILTYSRMRHHVIQALPALLKEGYDPEVIDLISLKPLDIDSISISVKKTHKVLIVEECMKTAGIGAELIAQINEYLFDELDAPVVRLSSQDIPTPYNGSLEQATVIQPSQIVDSVKSI 322          
BLAST of DC887487 vs. ExPASy Swiss-Prot
Match: ODPB_MESVI (Pyruvate dehydrogenase E1 component subunit beta OS=Mesostigma viride GN=pdhB PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 9.079e-57
Identity = 108/170 (63.53%), Postives = 134/170 (78.82%), Query Frame = -3
Query:  151 NAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQL 660
            NAKGL+K+AIRS+NP+   EHVLLYNLK  +PD +Y+  LE+AE+VR G  +TILTYSRMRY+V+QA K LV KGYDPE+ID+ SLKPFD+ TIG SI+KTH+VLIVEE M TGGI   L + I ENF D LD   +CLSS +VPTPY+G LEE ++VQ A I+ +VEQ+
Sbjct:  153 NAKGLLKSAIRSKNPIFFLEHVLLYNLKAEVPDNDYVLPLEKAEIVRQGNDITILTYSRMRYNVIQAVKVLVEKGYDPEIIDLISLKPFDIETIGKSIQKTHKVLIVEESMMTGGISNVLQSLILENFFDDLDNRPMCLSSPNVPTPYSGPLEEVSIVQTADIIESVEQI 322          
BLAST of DC887487 vs. ExPASy Swiss-Prot
Match: ODPB_CHLAT (Pyruvate dehydrogenase E1 component subunit beta OS=Chlorokybus atmophyticus GN=pdhB PE=3 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.236e-55
Identity = 105/168 (62.50%), Postives = 131/168 (77.98%), Query Frame = -3
Query:  157 NAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVE 660
            NAKGL+K+AIRS+NP++  EHVLLYNLK  +PD +Y+  LE+AE+VR G  +T+LTYSR RY+V+QA K LV +GYDPEVID+ SLKPFD+ TIG SI+KTH+VLIVEECM TGGI   L + I +NF D LDA  + LSS +VPTPY G LEE TVVQ   I+ ++E
Sbjct:  153 NAKGLLKSAIRSKNPILFIEHVLLYNLKGEVPDNDYLLPLEKAELVREGSDITVLTYSRQRYNVIQAVKVLVEEGYDPEVIDLISLKPFDMETIGKSIQKTHKVLIVEECMMTGGISNVLQSLIIDNFFDALDAAPLILSSPNVPTPYTGPLEEATVVQTIDIIESIE 320          
BLAST of DC887487 vs. ExPASy Swiss-Prot
Match: ODPB_CYAME (Pyruvate dehydrogenase E1 component subunit beta OS=Cyanidioschyzon merolae GN=pdhB PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.314e-52
Identity = 104/170 (61.18%), Postives = 129/170 (75.88%), Query Frame = -3
Query:  151 NAKGLMKAAIRSENPVILFEHVLLYNLKERIPDEEYICNLEEAEMVRPGEHVTILTYSRMRYHVMQAAKTLVNKGYDPEVIDIRSLKPFDLYTIGNSIKKTHRVLIVEECMRTGGIGASLTAAITENFHDYLDAPIVCLSSQDVPTPYAGTLEEWTVVQPAQIVTAVEQL 660
            NAKGL+KAAIR  NPV+  EHVLLYNLK+ IP +EY+  L++A++VR G  VTI+TYSRM +HVMQA K LV +G +PEVID+ SLKP DL T+  S+ KTH+ +IVEECM+TGGI A + A I  +  D LDAPI  LSS+DVPTPY G LE+  +VQP QIV AV+ L
Sbjct:  154 NAKGLLKAAIRDNNPVLFLEHVLLYNLKQEIPKQEYVLPLDKAQVVREGSDVTIITYSRMLHHVMQAVKQLVAQGMNPEVIDLISLKPIDLETLVTSVSKTHKAIIVEECMQTGGIAAEVMAQIYSHAFDELDAPIRRLSSKDVPTPYNGYLEQACLVQPTQIVEAVKTL 323          
The following BLAST results are available for this feature:
BLAST of DC887487 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
ODPB_STAPU3.797e-7177.78Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_ZYGCR6.062e-6973.84Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CHAGL8.753e-6871.51Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CHAVU2.636e-6468.24Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_PORPU1.655e-5863.53Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_GRATL1.655e-5863.53Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_PORYE1.829e-5763.53Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_MESVI9.079e-5763.53Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CHLAT2.236e-5562.50Pyruvate dehydrogenase E1 component subunit beta O... [more]
ODPB_CYAME2.314e-5261.18Pyruvate dehydrogenase E1 component subunit beta O... [more]

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Properties
Property NameValue
Genbank descriptionDC887487 EIC Citrus sinensis cDNA clone EIC0442 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887487 ID=DC887487; Name=DC887487; organism=Citrus sinensis; type=EST; length=662bp
AGACAACTTGATTTCTGAACAGTTGCACGTTTTTATCGCACAAAATTGCT
AACAATCTTAATAAATAAATATTCAAAGCAAAGCTGCTGAGAACTAACAC
TGCATAGATAGATTCGGTTATGACACTTCGGTATTCAAAAACTATTGGCA
AAGCTGCTCAACTGCTGTCACAATCTGGGCAGGTTGAACCACAGTCCATT
CCTCCAATGTGCCGGCATATGGAGTTGGCACGTCCTGTGATGATAAGCAT
ACAATAGGAGCATCCAAGTAATCATGGAAATTCTCAGTGATAGCTGCAGT
TAAACTAGCACCAATTCCACCAGTCCGCATGCACTCCTCCACAATCAGTA
CACGATGTGTCTTTTTAATTGAATTTCCAATGGTATAAAGATCAAATGGT
TTCAATGACCTGATGTCAATAACCTCAGGATCATACCCTTTGTTTACCAA
AGTTTTAGCAGCTTGCATCACATGATACCTCATTCGAGAATAGGTTAAAA
TAGTGACATGCTCCCCAGGCCTAACCATCTCAGCTTCCTCAAGATTACAA
ATGTATTCCTCATCTGGAATCCTTTCCTTGAGGTTGTAAAGCAACACATG
CTCGAAAAGTATAACTGGGTTCTCACTTCGGATTGCAGCTTTCATCAAGC
CCTTGGCATTGT
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