EY666451

Overview
NameEY666451
Unique NameEY666451
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY666451 vs. ExPASy Swiss-Prot
Match: COP1_ARATH (E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana GN=COP1 PE=1 SV=2)

HSP 1 Score: 386.341 bits (991), Expect = 1.122e-106
Identity = 191/279 (68.46%), Postives = 223/279 (79.93%), Query Frame = 3
Query:    6 MDEVSTEPVVPAVKPDMKPSSXXXXXXXXXXXXXXXXXXXXXXVGVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTSARQISKTASPLENFRQALQQGCGVSVKEIDSLMSLLSEKKRKMEQEEAERNMQILLDFLHCLRKQKVDELKEIQTDLHYIKEDINAVERHRIDLYRARDRYSVKLRMPGDDSNTRKSWLSSIDKNSSGIITSSLNAEGGSSAGSLQNRKGMGKLQQTFLGTPKE 842
            M+E+ST+PVVPAVKPD + SS                      +G  +LDKD+LCPICMQIIK+AFLTACGHSFCYMCIITHLRNKSDCPCC  +LTNNQLYPNFLLDKLLKKTSAR +SKTASPL+ FR+ALQ+GC VS+KE+D+L++LL+E+KRKMEQEEAERNMQILLDFLHCLRKQKVDEL E+QTDL YIKEDINAVERHRIDLYRARDRYSVKLRM GDD +TR +W    +KN  G  ++SL+  GG+  G+ QN+K  GK Q +  G PK+
Sbjct:    1 MEEISTDPVVPAVKPDPRTSSVGEGANRHENDDGGSGGSE---IGAPDLDKDLLCPICMQIIKDAFLTACGHSFCYMCIITHLRNKSDCPCCSQHLTNNQLYPNFLLDKLLKKTSARHVSKTASPLDQFREALQRGCDVSIKEVDNLLTLLAERKRKMEQEEAERNMQILLDFLHCLRKQKVDELNEVQTDLQYIKEDINAVERHRIDLYRARDRYSVKLRMLGDDPSTRNAW--PHEKNQIGFNSNSLSIRGGNFVGNYQNKKVEGKAQGSSHGLPKK 274          
BLAST of EY666451 vs. ExPASy Swiss-Prot
Match: COP1_PEA (E3 ubiquitin-protein ligase COP1 OS=Pisum sativum GN=COP1 PE=2 SV=1)

HSP 1 Score: 356.295 bits (913), Expect = 1.243e-97
Identity = 188/271 (69.37%), Postives = 215/271 (79.34%), Query Frame = 3
Query:    6 MDEVSTEPVVPAV-KPDMKPSSXXXXXXXXXXXXXXXXXXXXXXVGVSELDKDMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNNQLYPNFLLDKLLKKTSARQISKTASPLENFRQALQQGCGVSVKEIDSLMSLLSEKKRKMEQEEAERNMQILLDFLHCLRKQKVDELKEIQTDLHYIKEDINAVERHRIDLYRARDRYSVKLRMPGDDSNTRKSWLSSIDKNSSGIITSSLNAEGGSSAGSLQNRKGMGKLQ 815
            M+E S  P+VPAV KP+  PS                         +S+LDKD LCPICMQIIK+AFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTN+ L+PNFLLDKLLKKTS RQISKTASP+E+FRQA+Q+GC V++KE+D+L+ LL+EKKRKMEQEEAERNMQILLDFLHCLRKQKVDELKE+QTDL +IKEDI AVE+HR+DLYRARDRYSVKLRM  DDS  RKS  SS+D NSSG+ +S LN  GG S+GS   +K  GK Q
Sbjct:    1 MEEHSVGPLVPAVVKPE--PSKNFSTDTTAAGTFLLVPT-------MSDLDKDFLCPICMQIIKDAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTNSNLFPNFLLDKLLKKTSDRQISKTASPVEHFRQAVQKGCEVTMKELDTLLLLLTEKKRKMEQEEAERNMQILLDFLHCLRKQKVDELKEVQTDLQFIKEDIGAVEKHRMDLYRARDRYSVKLRML-DDSGGRKSRHSSMDLNSSGLASSPLNLRGGLSSGS-HTKKNDGKSQ 260          
BLAST of EY666451 vs. ExPASy Swiss-Prot
Match: RFWD2_HUMAN (E3 ubiquitin-protein ligase RFWD2 OS=Homo sapiens GN=RFWD2 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.833e-24
Identity = 59/165 (35.76%), Postives = 97/165 (58.79%), Query Frame = 3
Query:  159 DMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTN-NQLYPNFLLDKLLKKTSAR------QISKTASPLENFR-QALQQGCG-----VSVKEIDSLMSLLSEKKRKMEQEEAERNMQILLDFLHCLRKQKVDELKEIQTDLHYIKEDINAVE 614
            D +CPIC  +I+EA++T CGHSFCY CI   L + + CP C + + N + LYPNFL+++L+ K   R      ++  + S     R Q  Q   G     + +  ++ ++ LL +KK+++E E     +QIL++FL   R+ K ++L++IQ +L  ++EDI  VE
Sbjct:  133 DFVCPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNNRCPKCNYVVDNIDHLYPNFLVNELILKQKQRFEEKRFKLDHSVSSTNGHRWQIFQDWLGTDQDNLDLANVNLMLELLVQKKKQLEAESHAAQLQILMEFLKVARRNKREQLEQIQKELSVLEEDIKRVE 297          
BLAST of EY666451 vs. ExPASy Swiss-Prot
Match: RFWD2_MOUSE (E3 ubiquitin-protein ligase RFWD2 OS=Mus musculus GN=Rfwd2 PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 3.127e-24
Identity = 57/165 (34.55%), Postives = 96/165 (58.18%), Query Frame = 3
Query:  159 DMLCPICMQIIKEAFLTACGHSFCYMCIITHLRNKSDCPCCGHYLTN-NQLYPNFLLDKLLKKTSAR------QISKTASPLENFRQALQQGC------GVSVKEIDSLMSLLSEKKRKMEQEEAERNMQILLDFLHCLRKQKVDELKEIQTDLHYIKEDINAVE 614
            D +CPIC  +I+EA++T CGHSFCY CI   L + + CP C + + N + LYPNFL+++L+ K   R      ++  + S     R  + Q         + +  ++ ++ LL +KK+++E E     +QIL++FL   R+ K ++L++IQ +L  ++EDI  VE
Sbjct:  135 DFVCPICFDMIEEAYMTKCGHSFCYKCIHQSLEDNNRCPKCNYVVDNIDHLYPNFLVNELILKQKQRFEEKRFKLDHSVSSTNGHRWQIFQDLLGTDQDNLDLANVNLMLELLVQKKKQLEAESHAAQLQILMEFLKVARRNKREQLEQIQKELSVLEEDIKRVE 299          
The following BLAST results are available for this feature:
BLAST of EY666451 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
COP1_ARATH1.122e-10668.46E3 ubiquitin-protein ligase COP1 OS=Arabidopsis th... [more]
COP1_PEA1.243e-9769.37E3 ubiquitin-protein ligase COP1 OS=Pisum sativum ... [more]
RFWD2_HUMAN1.833e-2435.76E3 ubiquitin-protein ligase RFWD2 OS=Homo sapiens ... [more]
RFWD2_MOUSE3.127e-2434.55E3 ubiquitin-protein ligase RFWD2 OS=Mus musculus ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-102-018-A06-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666451 ID=EY666451; Name=EY666451; organism=Citrus sinensis; type=EST; length=848bp
AGTAAATGGACGAGGTCTCAACGGAGCCGGTGGTTCCGGCGGTGAAGCCA
GACATGAAGCCATCATCCACAGATACCGCTCCGCAAGAAACGGATGCCGC
CGCCGCCTACACCGCCGCTGCATCGACGTCGGAAGTGGGAGTGTCGGAGC
TGGACAAGGACATGCTGTGTCCGATTTGTATGCAGATAATAAAAGAAGCT
TTCTTGACGGCGTGTGGACACAGCTTCTGTTACATGTGCATCATCACTCA
TCTTCGTAATAAGAGCGATTGCCCTTGCTGTGGCCATTACCTCACTAACA
ATCAACTTTACCCTAATTTCTTGCTCGACAAGCTATTGAAGAAGACTTCT
GCTCGTCAAATATCAAAAACTGCTTCCCCTCTGGAAAATTTTCGTCAGGC
ATTACAACAGGGTTGCGGAGTGTCAGTTAAGGAGATAGACAGCCTCATGT
CACTCCTTTCAGAGAAAAAGAGGAAAATGGAACAAGAAGAAGCTGAAAGA
AATATGCAAATACTGCTGGACTTCTTGCATTGCTTACGGAAGCAAAAAGT
TGACGAATTGAAAGAGATACAAACTGATCTCCATTATATAAAGGAAGACA
TAAATGCTGTTGAGAGACATCGGATAGATCTGTACCGTGCAAGAGATCGG
TACTCTGTTAAATTGCGGATGCCTGGAGATGATTCTAATACAAGAAAGTC
ATGGCTTTCATCAATAGACAAGAACAGCAGTGGTATCATCACCAGTTCTC
TGAATGCAGAAGGAGGGTCGTCTGCAGGAAGTCTCCAAAACAGAAAGGGG
ATGGGAAAACTCCAGCAAACTTTCCTGGGAACTCCAAAGGAAGGATTC
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