CN184742
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN184742 vs. ExPASy Swiss-Prot
Match: CLPAB_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1) HSP 1 Score: 255.758 bits (652), Expect = 8.796e-68 Identity = 137/170 (80.59%), Postives = 137/170 (80.59%), Query Frame = 2 Query: 5 EGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 514 EGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGS VAARVLENLGADPSNIRTQVIRM KMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERV QILGRRTKNNPCLI Sbjct: 130 EGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVGESNEAVGASVGGGTSGQKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLI 299
BLAST of CN184742 vs. ExPASy Swiss-Prot
Match: CLPA_BRANA (ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplastic (Fragment) OS=Brassica napus GN=CLPA PE=2 SV=1) HSP 1 Score: 253.447 bits (646), Expect = 4.366e-67 Identity = 138/170 (81.18%), Postives = 138/170 (81.18%), Query Frame = 2 Query: 5 EGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 514 EGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGS VAARVLENLGADPSNIRTQVIRM NKMPTLEEYGTNLTKLAEEGKLDPVVGR PQIERVVQILGRRTKNNPCLI Sbjct: 80 EGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRM-VGENNEVTANVGGGSGTNKMPTLEEYGTNLTKLAEEGKLDPVVGRHPQIERVVQILGRRTKNNPCLI 248
BLAST of CN184742 vs. ExPASy Swiss-Prot
Match: CLPC_PEA (ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 252.292 bits (643), Expect = 9.725e-67 Identity = 135/170 (79.41%), Postives = 136/170 (80.00%), Query Frame = 2 Query: 5 EGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 514 EGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELS EEARQLGHNYIGS VAARVLENLGADP+NIRTQVIRM NK PTLEEYGTNLTKLAEEGKLDPVVGRQPQIERV QILGRRTKNNPCLI Sbjct: 130 EGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSQEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPTNIRTQVIRMVGESADSVTATVGSGSSNNKTPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLI 299
BLAST of CN184742 vs. ExPASy Swiss-Prot
Match: CLPAA_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1) HSP 1 Score: 249.98 bits (637), Expect = 4.827e-66 Identity = 134/170 (78.82%), Postives = 136/170 (80.00%), Query Frame = 2 Query: 5 EGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 514 EGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGF+AVEIPFTPRAKRVLELSLEEARQLGHNYIGS VAARVLENLGADP+NIRTQVIRM KMPTLEEYGTNLTKLAEEGKLDPVVGRQ QIERV QILGRRTKNNPCLI Sbjct: 132 EGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFIAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPTNIRTQVIRMVGESSEAVGASVGGGTSGLKMPTLEEYGTNLTKLAEEGKLDPVVGRQAQIERVTQILGRRTKNNPCLI 301
BLAST of CN184742 vs. ExPASy Swiss-Prot
Match: CLPC_GUITH (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Guillardia theta GN=clpC PE=3 SV=1) HSP 1 Score: 218.009 bits (554), Expect = 2.033e-56 Identity = 118/170 (69.41%), Postives = 129/170 (75.88%), Query Frame = 2 Query: 5 EGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 514 EGTGIAAKVLKSMG+NLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIG+ VAARVLENL D + +RTQVIR+ K PTLEE+G+NLT+ A EGKLDPV+GRQ +IERV+QILGRRTKNNP LI Sbjct: 40 EGTGIAAKVLKSMGVNLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLLLGLIREGEGVAARVLENLALDLTKVRTQVIRL---LGDTAEVSATNGQTKGKTPTLEEFGSNLTQKAAEGKLDPVIGRQKEIERVIQILGRRTKNNPILI 206
BLAST of CN184742 vs. ExPASy Swiss-Prot
Match: CLPC_PORYE (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra yezoensis GN=clpC PE=3 SV=1) HSP 1 Score: 216.853 bits (551), Expect = 4.528e-56 Identity = 116/170 (68.24%), Postives = 129/170 (75.88%), Query Frame = 2 Query: 5 EGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 514 EGTGIAA+VLKSM +NLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIG+ VAARVLENL D S+IR +VI+M +K PTLEE+G+NLT++A EG LDPVVGRQ +IERV+QILGRRTKNNP LI Sbjct: 40 EGTGIAAQVLKSMNVNLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLLMGLVREGEGVAARVLENLAVDVSSIRAEVIQMLGENAEANVSGSNTTQARSKTPTLEEFGSNLTQMAMEGGLDPVVGRQKEIERVIQILGRRTKNNPVLI 209
BLAST of CN184742 vs. ExPASy Swiss-Prot
Match: CLPC_PORPU (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra purpurea GN=clpC PE=3 SV=1) HSP 1 Score: 216.468 bits (550), Expect = 5.914e-56 Identity = 116/170 (68.24%), Postives = 129/170 (75.88%), Query Frame = 2 Query: 5 EGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 514 EGTGIAA+VLKSM +NLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIG+ VAARVLENL D S+IR +VI+M +K PTLEE+G+NLT++A EG LDPVVGRQ +IERV+QILGRRTKNNP LI Sbjct: 40 EGTGIAAQVLKSMNVNLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLLMGLVREGEGVAARVLENLAVDVSSIRAEVIQMLGENAEANVSGSNATQARSKTPTLEEFGSNLTQMAIEGGLDPVVGRQKEIERVIQILGRRTKNNPVLI 209
BLAST of CN184742 vs. ExPASy Swiss-Prot
Match: CLPC_CYACA (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Cyanidium caldarium GN=clpC PE=3 SV=1) HSP 1 Score: 202.986 bits (515), Expect = 6.766e-52 Identity = 107/170 (62.94%), Postives = 126/170 (74.12%), Query Frame = 2 Query: 5 EGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 514 EGTG+AAK LKSMGI LKDAR+EVEKIIGRGSGFVA+EIPFTPRAK++LEL++EE+R L HNY+G+ VAARVLENLG D +R+ +IRM +K+PTLEE+GTNLT++A EGKLDPVVGR +IERVVQILGRRTKNNP LI Sbjct: 71 EGTGLAAKALKSMGITLKDARIEVEKIIGRGSGFVAIEIPFTPRAKKILELAIEESRILTHNYVGTEHLLLGLIKEGEGVAARVLENLGVDLPKLRSNIIRM---IGETSEVSVGATSGRSKVPTLEEFGTNLTQMAVEGKLDPVVGRAKEIERVVQILGRRTKNNPVLI 237
BLAST of CN184742 vs. ExPASy Swiss-Prot
Match: CLPC_MYCTU (Probable ATP-dependent Clp protease ATP-binding subunit OS=Mycobacterium tuberculosis GN=clpC PE=1 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 6.798e-36 Identity = 84/176 (47.73%), Postives = 111/176 (63.07%), Query Frame = 2 Query: 5 EGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPT------LEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 514 EG G+AAK L+S+GI+L+ R +VE+IIG+G + IPFTPRAK+VLELSL EA QLGHNYIG+ VAA+VL LGA+ + +R QVI++ + + L+++G NLT A EGKLDPV+GR+ +IERV+Q+L RRTKNNP LI Sbjct: 40 EGEGVAAKSLESLGISLEGVRSQVEEIIGQGQQAPSGHIPFTPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLLSGYQGKEAAEAGTGGRGGESGSPSTSLVLDQFGRNLTAAAMEGKLDPVIGREKEIERVMQVLSRRTKNNPVLI 215
BLAST of CN184742 vs. ExPASy Swiss-Prot
Match: CLPC_MYCBO (Probable ATP-dependent Clp protease ATP-binding subunit OS=Mycobacterium bovis GN=clpC PE=3 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 6.798e-36 Identity = 84/176 (47.73%), Postives = 111/176 (63.07%), Query Frame = 2 Query: 5 EGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPT------LEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 514 EG G+AAK L+S+GI+L+ R +VE+IIG+G + IPFTPRAK+VLELSL EA QLGHNYIG+ VAA+VL LGA+ + +R QVI++ + + L+++G NLT A EGKLDPV+GR+ +IERV+Q+L RRTKNNP LI Sbjct: 40 EGEGVAAKSLESLGISLEGVRSQVEEIIGQGQQAPSGHIPFTPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLLSGYQGKEAAEAGTGGRGGESGSPSTSLVLDQFGRNLTAAAMEGKLDPVIGREKEIERVMQVLSRRTKNNPVLI 215 The following BLAST results are available for this feature:
BLAST of CN184742 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 71
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Sequences
The
following sequences are available for this feature:
EST sequence >CN184742 ID=CN184742; Name=CN184742; organism=Citrus sinensis; type=EST; length=516bpback to top |