CN184742

Overview
NameCN184742
Unique NameCN184742
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length516
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184742 vs. ExPASy Swiss-Prot
Match: CLPAB_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 8.796e-68
Identity = 137/170 (80.59%), Postives = 137/170 (80.59%), Query Frame = 2
Query:    5 EGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 514
            EGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGS             VAARVLENLGADPSNIRTQVIRM                   KMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERV QILGRRTKNNPCLI
Sbjct:  130 EGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVGESNEAVGASVGGGTSGQKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLI 299          
BLAST of CN184742 vs. ExPASy Swiss-Prot
Match: CLPA_BRANA (ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplastic (Fragment) OS=Brassica napus GN=CLPA PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 4.366e-67
Identity = 138/170 (81.18%), Postives = 138/170 (81.18%), Query Frame = 2
Query:    5 EGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 514
            EGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGS             VAARVLENLGADPSNIRTQVIRM                  NKMPTLEEYGTNLTKLAEEGKLDPVVGR PQIERVVQILGRRTKNNPCLI
Sbjct:   80 EGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRM-VGENNEVTANVGGGSGTNKMPTLEEYGTNLTKLAEEGKLDPVVGRHPQIERVVQILGRRTKNNPCLI 248          
BLAST of CN184742 vs. ExPASy Swiss-Prot
Match: CLPC_PEA (ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 9.725e-67
Identity = 135/170 (79.41%), Postives = 136/170 (80.00%), Query Frame = 2
Query:    5 EGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 514
            EGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELS EEARQLGHNYIGS             VAARVLENLGADP+NIRTQVIRM                  NK PTLEEYGTNLTKLAEEGKLDPVVGRQPQIERV QILGRRTKNNPCLI
Sbjct:  130 EGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSQEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPTNIRTQVIRMVGESADSVTATVGSGSSNNKTPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVTQILGRRTKNNPCLI 299          
BLAST of CN184742 vs. ExPASy Swiss-Prot
Match: CLPAA_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 4.827e-66
Identity = 134/170 (78.82%), Postives = 136/170 (80.00%), Query Frame = 2
Query:    5 EGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 514
            EGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGF+AVEIPFTPRAKRVLELSLEEARQLGHNYIGS             VAARVLENLGADP+NIRTQVIRM                   KMPTLEEYGTNLTKLAEEGKLDPVVGRQ QIERV QILGRRTKNNPCLI
Sbjct:  132 EGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFIAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPTNIRTQVIRMVGESSEAVGASVGGGTSGLKMPTLEEYGTNLTKLAEEGKLDPVVGRQAQIERVTQILGRRTKNNPCLI 301          
BLAST of CN184742 vs. ExPASy Swiss-Prot
Match: CLPC_GUITH (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Guillardia theta GN=clpC PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 2.033e-56
Identity = 118/170 (69.41%), Postives = 129/170 (75.88%), Query Frame = 2
Query:    5 EGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 514
            EGTGIAAKVLKSMG+NLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIG+             VAARVLENL  D + +RTQVIR+                   K PTLEE+G+NLT+ A EGKLDPV+GRQ +IERV+QILGRRTKNNP LI
Sbjct:   40 EGTGIAAKVLKSMGVNLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLLLGLIREGEGVAARVLENLALDLTKVRTQVIRL---LGDTAEVSATNGQTKGKTPTLEEFGSNLTQKAAEGKLDPVIGRQKEIERVIQILGRRTKNNPILI 206          
BLAST of CN184742 vs. ExPASy Swiss-Prot
Match: CLPC_PORYE (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra yezoensis GN=clpC PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 4.528e-56
Identity = 116/170 (68.24%), Postives = 129/170 (75.88%), Query Frame = 2
Query:    5 EGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 514
            EGTGIAA+VLKSM +NLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIG+             VAARVLENL  D S+IR +VI+M                  +K PTLEE+G+NLT++A EG LDPVVGRQ +IERV+QILGRRTKNNP LI
Sbjct:   40 EGTGIAAQVLKSMNVNLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLLMGLVREGEGVAARVLENLAVDVSSIRAEVIQMLGENAEANVSGSNTTQARSKTPTLEEFGSNLTQMAMEGGLDPVVGRQKEIERVIQILGRRTKNNPVLI 209          
BLAST of CN184742 vs. ExPASy Swiss-Prot
Match: CLPC_PORPU (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra purpurea GN=clpC PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 5.914e-56
Identity = 116/170 (68.24%), Postives = 129/170 (75.88%), Query Frame = 2
Query:    5 EGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 514
            EGTGIAA+VLKSM +NLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIG+             VAARVLENL  D S+IR +VI+M                  +K PTLEE+G+NLT++A EG LDPVVGRQ +IERV+QILGRRTKNNP LI
Sbjct:   40 EGTGIAAQVLKSMNVNLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGTEHLLMGLVREGEGVAARVLENLAVDVSSIRAEVIQMLGENAEANVSGSNATQARSKTPTLEEFGSNLTQMAIEGGLDPVVGRQKEIERVIQILGRRTKNNPVLI 209          
BLAST of CN184742 vs. ExPASy Swiss-Prot
Match: CLPC_CYACA (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Cyanidium caldarium GN=clpC PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 6.766e-52
Identity = 107/170 (62.94%), Postives = 126/170 (74.12%), Query Frame = 2
Query:    5 EGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 514
            EGTG+AAK LKSMGI LKDAR+EVEKIIGRGSGFVA+EIPFTPRAK++LEL++EE+R L HNY+G+             VAARVLENLG D   +R+ +IRM                  +K+PTLEE+GTNLT++A EGKLDPVVGR  +IERVVQILGRRTKNNP LI
Sbjct:   71 EGTGLAAKALKSMGITLKDARIEVEKIIGRGSGFVAIEIPFTPRAKKILELAIEESRILTHNYVGTEHLLLGLIKEGEGVAARVLENLGVDLPKLRSNIIRM---IGETSEVSVGATSGRSKVPTLEEFGTNLTQMAVEGKLDPVVGRAKEIERVVQILGRRTKNNPVLI 237          
BLAST of CN184742 vs. ExPASy Swiss-Prot
Match: CLPC_MYCTU (Probable ATP-dependent Clp protease ATP-binding subunit OS=Mycobacterium tuberculosis GN=clpC PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 6.798e-36
Identity = 84/176 (47.73%), Postives = 111/176 (63.07%), Query Frame = 2
Query:    5 EGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPT------LEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 514
            EG G+AAK L+S+GI+L+  R +VE+IIG+G    +  IPFTPRAK+VLELSL EA QLGHNYIG+             VAA+VL  LGA+ + +R QVI++                   +  +      L+++G NLT  A EGKLDPV+GR+ +IERV+Q+L RRTKNNP LI
Sbjct:   40 EGEGVAAKSLESLGISLEGVRSQVEEIIGQGQQAPSGHIPFTPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLLSGYQGKEAAEAGTGGRGGESGSPSTSLVLDQFGRNLTAAAMEGKLDPVIGREKEIERVMQVLSRRTKNNPVLI 215          
BLAST of CN184742 vs. ExPASy Swiss-Prot
Match: CLPC_MYCBO (Probable ATP-dependent Clp protease ATP-binding subunit OS=Mycobacterium bovis GN=clpC PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 6.798e-36
Identity = 84/176 (47.73%), Postives = 111/176 (63.07%), Query Frame = 2
Query:    5 EGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSXXXXXXXXXXXXXVAARVLENLGADPSNIRTQVIRMXXXXXXXXXXXXXXXXXXNKMPT------LEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLI 514
            EG G+AAK L+S+GI+L+  R +VE+IIG+G    +  IPFTPRAK+VLELSL EA QLGHNYIG+             VAA+VL  LGA+ + +R QVI++                   +  +      L+++G NLT  A EGKLDPV+GR+ +IERV+Q+L RRTKNNP LI
Sbjct:   40 EGEGVAAKSLESLGISLEGVRSQVEEIIGQGQQAPSGHIPFTPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGAELTRVRQQVIQLLSGYQGKEAAEAGTGGRGGESGSPSTSLVLDQFGRNLTAAAMEGKLDPVIGREKEIERVMQVLSRRTKNNPVLI 215          
The following BLAST results are available for this feature:
BLAST of CN184742 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
CLPAB_SOLLC8.796e-6880.59ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPA_BRANA4.366e-6781.18ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PEA9.725e-6779.41ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPAA_SOLLC4.827e-6678.82ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_GUITH2.033e-5669.41ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PORYE4.528e-5668.24ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PORPU5.914e-5668.24ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_CYACA6.766e-5262.94ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_MYCTU6.798e-3647.73Probable ATP-dependent Clp protease ATP-binding su... [more]
CLPC_MYCBO6.798e-3647.73Probable ATP-dependent Clp protease ATP-binding su... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006A06_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184742 ID=CN184742; Name=CN184742; organism=Citrus sinensis; type=EST; length=516bp
GAGGGAAGGCACTGGCATTGCTGCTAAGGTTCTTAAATCAATGGGAATCA
ATCTTAAAGATGCACGTGTAGAAGTGGAGAAGATAATTGGAAGGGGAAGT
GGTTTTGTTGCTGTGGAAATTCCGTTCACTCCTCGTGCAAAGCGTGTCTT
GGAGCTTTCTCTGGAGGAAGCCCGCCAGCTGGGCCATAATTATATTGGGT
CCGAGCATCTTCTCCTTGGGCTTCTTCGTGAAGGGGAAGGTGTAGCAGCC
CGTGTTCTTGAGAATTTAGGTGCTGACCCTAGTAACATCCGCACACAGGT
TATTCGTATGGTTGGTGAGAGCACAGAAGCTGTTGGCGCTGGTGTTGGAG
GAGGAAGCAGTGGCAACAAGATGCCAACACTGGAGGAGTATGGAACAAAT
TTGACTAAGCTAGCAGAGGAGGGAAAATTGGATCCTGTTGTTGGGAGACA
GCCACAAATAGAGCGTGTTGTCCAAATTTTGGGCCGTCGAACTAAGAATA
ATCCATGTCTTATTGG
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