CN184741

Overview
NameCN184741
Unique NameCN184741
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length322
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN184741 vs. ExPASy Swiss-Prot
Match: CLPC_PEA (ATP-dependent Clp protease ATP-binding subunit clpC homolog, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 4.555e-48
Identity = 93/96 (96.88%), Postives = 96/96 (100.00%), Query Frame = -2 
Query:   34 RARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEMKR 321
            RARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDE+++
Sbjct:  624 RARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEK 719
[Close]
BLAST of CN184741 vs. ExPASy Swiss-Prot
Match: CLPAB_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4B, chloroplastic OS=Solanum lycopersicum GN=CD4B PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 4.555e-48
Identity = 93/96 (96.88%), Postives = 96/96 (100.00%), Query Frame = -2 
Query:   34 RARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEMKR 321
            RARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDE+++
Sbjct:  624 RARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEK 719
[Close]
BLAST of CN184741 vs. ExPASy Swiss-Prot
Match: CLPAA_SOLLC (ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic OS=Solanum lycopersicum GN=CD4A PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 2.952e-47
Identity = 91/96 (94.79%), Postives = 95/96 (98.96%), Query Frame = -2 
Query:   34 RARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEMKR 321
            RARVGLKNPNRPIASFIFSGPTGVGKSELAK+LA YYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDE+++
Sbjct:  627 RARVGLKNPNRPIASFIFSGPTGVGKSELAKSLATYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEK 722
[Close]
BLAST of CN184741 vs. ExPASy Swiss-Prot
Match: CLPC_GUITH (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Guillardia theta GN=clpC PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 4.714e-45
Identity = 85/96 (88.54%), Postives = 94/96 (97.92%), Query Frame = -2 
Query:   34 RARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEMKR 321
            RARVGLKNPNRPIASFIFSGPTGVGK+EL KALA+Y+FGSEEAM+RLDMSE+MERHTVSKLIGSPPGYVGY EGGQLTE+VRRRPYTVVLFDE+++
Sbjct:  527 RARVGLKNPNRPIASFIFSGPTGVGKTELTKALASYFFGSEEAMVRLDMSEYMERHTVSKLIGSPPGYVGYNEGGQLTESVRRRPYTVVLFDEIEK 622
[Close]
BLAST of CN184741 vs. ExPASy Swiss-Prot
Match: CLPA_BRANA (ATP-dependent Clp protease ATP-binding subunit clpA homolog, chloroplastic (Fragment) OS=Brassica napus GN=CLPA PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 6.156e-45
Identity = 89/96 (92.71%), Postives = 92/96 (95.83%), Query Frame = -2 
Query:   34 RARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEMKR 321
            RARVGLKNPNRPIASFIF GPTGVGKSELAKALAAYYFG EEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTE  QLTEAVRRRPYTVVLFDE+++
Sbjct:  572 RARVGLKNPNRPIASFIFFGPTGVGKSELAKALAAYYFGCEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEPPQLTEAVRRRPYTVVLFDEIEK 667
[Close]
BLAST of CN184741 vs. ExPASy Swiss-Prot
Match: CLPC_CYACA (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Cyanidium caldarium GN=clpC PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 8.040e-45
Identity = 84/96 (87.50%), Postives = 94/96 (97.92%), Query Frame = -2 
Query:   34 RARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEMKR 321
            RARVGLKNPNRPIASFIFSGPTGVGK+EL KA+A+Y+FGSEEAM+RLDMSE+MERHTVSKLIGSPPGYVGY EGGQLTEAVR+RPYTVVLFDE+++
Sbjct:  560 RARVGLKNPNRPIASFIFSGPTGVGKTELTKAMASYFFGSEEAMVRLDMSEYMERHTVSKLIGSPPGYVGYNEGGQLTEAVRKRPYTVVLFDEIEK 655
[Close]
BLAST of CN184741 vs. ExPASy Swiss-Prot
Match: CLPC_PORYE (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra yezoensis GN=clpC PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 4.412e-43
Identity = 81/96 (84.38%), Postives = 93/96 (96.88%), Query Frame = -2 
Query:   34 RARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEMKR 321
            RARVGLKNPNRPIASFIFSGPTGVGK+EL KALA+Y+FGSE +MIRLDMSE+MERHTVSKLIGSPPGYVGY+EGG LTEAVR++PYTV+LFDE+++
Sbjct:  530 RARVGLKNPNRPIASFIFSGPTGVGKTELTKALASYFFGSEASMIRLDMSEYMERHTVSKLIGSPPGYVGYSEGGYLTEAVRKKPYTVILFDEIEK 625
[Close]
BLAST of CN184741 vs. ExPASy Swiss-Prot
Match: CLPC_PORPU (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra purpurea GN=clpC PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 4.412e-43
Identity = 81/96 (84.38%), Postives = 93/96 (96.88%), Query Frame = -2 
Query:   34 RARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEMKR 321
            RARVGLKNPNRPIASFIFSGPTGVGK+EL KALA+Y+FGSE +MIRLDMSE+MERHTVSKLIGSPPGYVGY+EGG LTEAVR++PYTV+LFDE+++
Sbjct:  530 RARVGLKNPNRPIASFIFSGPTGVGKTELTKALASYFFGSEASMIRLDMSEYMERHTVSKLIGSPPGYVGYSEGGYLTEAVRKKPYTVILFDEIEK 625
[Close]
BLAST of CN184741 vs. ExPASy Swiss-Prot
Match: ERD1_ARATH (ERD1 protein, chloroplastic OS=Arabidopsis thaliana GN=ERD1 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.328e-39
Identity = 75/96 (78.12%), Postives = 90/96 (93.75%), Query Frame = -2 
Query:   34 RARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEMKR 321
            R+RVGLK+P+RPIA+ +F GPTGVGK+EL KALAA YFGSEE+M+RLDMSE+MERHTVSKLIGSPPGYVG+ EGG LTEA+RRRP+TVVLFDE+++
Sbjct:  645 RSRVGLKDPDRPIAAMLFCGPTGVGKTELTKALAANYFGSEESMLRLDMSEYMERHTVSKLIGSPPGYVGFEEGGMLTEAIRRRPFTVVLFDEIEK 740
[Close]
BLAST of CN184741 vs. ExPASy Swiss-Prot
Match: CLPC_ODOSI (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Odontella sinensis GN=clpC PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 8.610e-39
Identity = 73/96 (76.04%), Postives = 90/96 (93.75%), Query Frame = -2 
Query:   34 RARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEMKR 321
            RARVGL+NP+RPIASFIF+GPTGVGK+EL KAL+ Y FG+E++MIRLDMSE+ME+HTV+KLIGSPPGYVGY EGGQLTEAV+ +PY+VVL DE+++
Sbjct:  541 RARVGLRNPDRPIASFIFAGPTGVGKTELTKALSEYMFGNEDSMIRLDMSEYMEKHTVAKLIGSPPGYVGYNEGGQLTEAVQTKPYSVVLLDEVEK 636
The following BLAST results are available for this feature:
BLAST of CN184741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 200
Match NameE-valueIdentityDescription
CLPC_PEA4.555e-4896.88ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPAB_SOLLC4.555e-4896.88ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPAA_SOLLC2.952e-4794.79ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_GUITH4.714e-4588.54ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPA_BRANA6.156e-4592.71ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_CYACA8.040e-4587.50ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PORYE4.412e-4384.38ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPC_PORPU4.412e-4384.38ATP-dependent Clp protease ATP-binding subunit clp... [more]
ERD1_ARATH1.328e-3978.13ERD1 protein, chloroplastic OS=Arabidopsis thalian... [more]
CLPC_ODOSI8.610e-3976.04ATP-dependent Clp protease ATP-binding subunit clp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0006A06_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0006A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184741 ID=CN184741; Name=CN184741; organism=Citrus sinensis; type=EST; length=322bp
GGTNTGNAGCTTTTGTTGAAAAATCAGGATGAGCCTTTTCATCTCATCAA
AGAGTACAACAGTATAAGGACGACGGCGAACAGCCTCAGTCAGCTGACCC
CCCTCAGTGTAACCAACATAACCAGGTGGTGAACCAATGAGCTTGGAAAC
AGTGTGTCTTTCCATGAACTCACTCATATCAAGCCTGATCATGGCCTCCT
CTGAGCCAAAGTAATAGGCAGCCAGTGCTTTGGCCAGTTCAGACTTCCCG
ACACCAGTTGGACCAGAAAAGATGAAACTAGCAATTGGTCGATTGGGGTT
CTTGAGTCCAACACGTGCACGC
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