CN184708 | Citrus Genome Database

Overview


Name	CN184708
Unique Name	CN184708
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	444

Libraries


Library Name	Type
Ruby Orange Developing Flower cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CN184708 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 7.016e-25
Identity = 42/62 (67.74%), Postives = 51/62 (82.26%), Query Frame = -2

Query:  174 GVRSLNGAARTTPVRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 359
            GVRSLN AA+TT  RQAACNCLK A+ +I+G+  N+AAGLP +CGV +PYKISPSTDC  V+
Sbjct:   30 GVRSLNNAAKTTADRQAACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTDCKSVK 91

HSP 2 Score: 40.0466 bits (92), Expect = 7.016e-25
Identity = 18/29 (62.07%), Postives = 21/29 (72.41%), Query Frame = -1

Query:  358 CGQVTPSLAPCIPFLRTGGRFPPPPCCSG 444
            CGQV+ SLAPCI +LR GG   P  CC+G
Sbjct:    3 CGQVSSSLAPCINYLRAGG-VVPANCCNG 30

[Close]

BLAST of CN184708 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.172e-24
Identity = 41/63 (65.08%), Postives = 49/63 (77.78%), Query Frame = -2

Query:  174 AGVRSLNGAARTTPVRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 362
            +GV+SLN AA+TTP RQAAC CLK AY +I G+    AA  P +CGV IPYKISPSTDCS+V+
Sbjct:   54 SGVKSLNSAAKTTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSKVQ 116

HSP 2 Score: 42.743 bits (99), Expect = 1.172e-24
Identity = 19/29 (65.52%), Postives = 21/29 (72.41%), Query Frame = -1

Query:  358 CGQVTPSLAPCIPFLRTGGRFPPPPCCSG 444
            CGQV+ SLAPCI +L  GG   PP CCSG
Sbjct:   28 CGQVSSSLAPCISYLTKGGAV-PPACCSG 55

[Close]

BLAST of CN184708 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.986e-24
Identity = 38/62 (61.29%), Postives = 48/62 (77.42%), Query Frame = -2

Query:  174 GVRSLNGAARTTPVRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 359
            G+R++NG ARTT  RQ ACNCLK   G+I G+ PN AAGLP +CGV +PYKIS ST+C+ V+
Sbjct:   54 GIRTINGLARTTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCATVK 115

HSP 2 Score: 44.669 bits (104), Expect = 1.986e-24
Identity = 19/29 (65.52%), Postives = 23/29 (79.31%), Query Frame = -1

Query:  358 CGQVTPSLAPCIPFLRTGGRFPPPPCCSG 444
            CGQVT SLAPCI ++R+GG   PP CC+G
Sbjct:   27 CGQVTSSLAPCIGYVRSGGAV-PPACCNG 54

[Close]

BLAST of CN184708 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.439e-21
Identity = 34/62 (54.84%), Postives = 47/62 (75.81%), Query Frame = -2

Query:  174 GVRSLNGAARTTPVRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 359
            G++++NG A+TTP RQAACNCLK   G++ G+ P  A  LP +CGV +PYKIS ST+C+ V+
Sbjct:   54 GIKTINGLAKTTPDRQAACNCLKNLAGSVSGVNPGNAESLPGKCGVNVPYKISTSTNCATVK 115

HSP 2 Score: 39.6614 bits (91), Expect = 1.439e-21
Identity = 16/29 (55.17%), Postives = 22/29 (75.86%), Query Frame = -1

Query:  358 CGQVTPSLAPCIPFLRTGGRFPPPPCCSG 444
            C QV+ +LAPCI ++R+GG   PP CC+G
Sbjct:   27 CSQVSANLAPCINYVRSGGAV-PPACCNG 54

[Close]

BLAST of CN184708 vs. ExPASy Swiss-Prot
Match: NLTP2_SORBI (Non-specific lipid-transfer protein 2 OS=Sorghum bicolor GN=LTP2 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.933e-21
Identity = 42/62 (67.74%), Postives = 47/62 (75.81%), Query Frame = -2

Query:  177 AGVRSLNGAARTTPVRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 362
            +GVRSLN AARTT  R+AACNCLK A   IRG+    AA +PS+CGV IPY IS STDCSRV
Sbjct:   60 SGVRSLNSAARTTADRRAACNCLKNAARGIRGLNVGKAASIPSKCGVSIPYTISTSTDCSRV 121

HSP 2 Score: 35.4242 bits (80), Expect = 6.933e-21
Identity = 13/29 (44.83%), Postives = 18/29 (62.07%), Query Frame = -1

Query:  358 CGQVTPSLAPCIPFLRTGGRFPPPPCCSG 444
            CGQV+ ++ PC+ + R  G  P   CCSG
Sbjct:   33 CGQVSSAIGPCLSYARGQGSGPSAGCCSG 61

[Close]

BLAST of CN184708 vs. ExPASy Swiss-Prot
Match: NLTP_MAIZE (Non-specific lipid-transfer protein OS=Zea mays PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 6.955e-21
Identity = 40/62 (64.52%), Postives = 46/62 (74.19%), Query Frame = -2

Query:  177 AGVRSLNGAARTTPVRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRV 362
            +GVRSLN AARTT  R+AACNCLK A   + G+    AA +PS+CGV IPY IS STDCSRV
Sbjct:   58 SGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV 119

HSP 2 Score: 37.3502 bits (85), Expect = 6.955e-21
Identity = 15/29 (51.72%), Postives = 18/29 (62.07%), Query Frame = -1

Query:  358 CGQVTPSLAPCIPFLRTGGRFPPPPCCSG 444
            CGQV  ++APCI + R  G  P   CCSG
Sbjct:   31 CGQVASAIAPCISYARGQGSGPSAGCCSG 59

[Close]

BLAST of CN184708 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 6.984e-21
Identity = 33/62 (53.23%), Postives = 46/62 (74.19%), Query Frame = -2

Query:  174 GVRSLNGAARTTPVRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 359
            G+R++N  A+TT  RQ ACNCLK+   ++ G+  N AA LP +CGV +PYKISPST+C+ V+
Sbjct:   56 GIRNINNLAKTTADRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCATVK 117

HSP 2 Score: 41.2022 bits (95), Expect = 6.984e-21
Identity = 17/29 (58.62%), Postives = 22/29 (75.86%), Query Frame = -1

Query:  358 CGQVTPSLAPCIPFLRTGGRFPPPPCCSG 444
            CGQV+ +LAPCI ++R GG   PP CC+G
Sbjct:   29 CGQVSSNLAPCIAYVRGGGAV-PPACCNG 56

[Close]

BLAST of CN184708 vs. ExPASy Swiss-Prot
Match: NLTP1_TOBAC (Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.189e-20
Identity = 41/62 (66.13%), Postives = 46/62 (74.19%), Query Frame = -2

Query:  174 GVRSLNGAARTTPVRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 359
            GV++L  +ARTT  RQ AC CLK A G I GI    AAGLPS CGV IPYKISPSTDCS+V+
Sbjct:   53 GVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSKVQ 114

HSP 2 Score: 35.8094 bits (81), Expect = 1.189e-20
Identity = 16/29 (55.17%), Postives = 19/29 (65.52%), Query Frame = -1

Query:  358 CGQVTPSLAPCIPFLRTGGRFPPPPCCSG 444
            CGQVT +LAPC+ +LR  G  P   CC G
Sbjct:   27 CGQVTSNLAPCLAYLRNTG--PLGRCCGG 53

[Close]

BLAST of CN184708 vs. ExPASy Swiss-Prot
Match: NLTP1_LENCU (Non-specific lipid-transfer protein 1 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.372e-20
Identity = 38/62 (61.29%), Postives = 48/62 (77.42%), Query Frame = -2

Query:  174 GVRSLNGAARTTPVRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 359
            GV+ LNGAARTT  R+AACNCLK + G+I G+KP   A LP +CGVR+PY IS ST+C+ +R
Sbjct:   56 GVKRLNGAARTTIDRRAACNCLKSSAGSISGLKPGNVATLPGKCGVRLPYTISTSTNCNTIR 117

HSP 2 Score: 35.039 bits (79), Expect = 3.372e-20
Identity = 14/29 (48.28%), Postives = 19/29 (65.52%), Query Frame = -1

Query:  358 CGQVTPSLAPCIPFLRTGGRFPPPPCCSG 444
            CG V+ +L PC+ +L+ GG  P P CC G
Sbjct:   29 CGTVSGALVPCLTYLK-GGPGPSPQCCGG 56

[Close]

BLAST of CN184708 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLLC (Non-specific lipid-transfer protein 1 OS=Solanum lycopersicum GN=TSW12 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.432e-20
Identity = 38/62 (61.29%), Postives = 46/62 (74.19%), Query Frame = -2

Query:  174 GVRSLNGAARTTPVRQAACNCLKRAYGTIRGIKPNVAAGLPSQCGVRIPYKISPSTDCSRVR 359
            GV++L G+A+TT  R+ AC CLK A   I+GI  N AAG+PS C V IPYKISPSTDCS V+
Sbjct:   53 GVKNLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTVQ 114

HSP 2 Score: 38.5058 bits (88), Expect = 4.432e-20
Identity = 17/29 (58.62%), Postives = 20/29 (68.97%), Query Frame = -1

Query:  358 CGQVTPSLAPCIPFLRTGGRFPPPPCCSG 444
            CGQVT  LAPC+P+L+  GR P   CC G
Sbjct:   27 CGQVTAGLAPCLPYLQ--GRGPLGGCCGG 53

The following BLAST results are available for this feature:

BLAST of CN184708 vs. ExPASy Swiss-Prot

BLAST of CN184708 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67


Match Name	E-value	Identity	Description
LTP1_MORNI	7.016e-25	67.74	Non-specific lipid-transfer protein 1 OS=Morus nig...	[more]
NLTP_HELAN	1.172e-24	65.08	Non-specific lipid-transfer protein OS=Helianthus ...	[more]
NLTP_MALDO	1.986e-24	61.29	Non-specific lipid-transfer protein OS=Malus domes...	[more]
NLTP_PYRCO	1.439e-21	54.84	Non-specific lipid-transfer protein OS=Pyrus commu...	[more]
NLTP2_SORBI	6.933e-21	67.74	Non-specific lipid-transfer protein 2 OS=Sorghum b...	[more]
NLTP_MAIZE	6.955e-21	64.52	Non-specific lipid-transfer protein OS=Zea mays PE...	[more]
NLTP_PRUAV	6.984e-21	53.23	Non-specific lipid-transfer protein OS=Prunus aviu...	[more]
NLTP1_TOBAC	1.189e-20	66.13	Non-specific lipid-transfer protein 1 OS=Nicotiana...	[more]
NLTP1_LENCU	3.372e-20	61.29	Non-specific lipid-transfer protein 1 OS=Lens culi...	[more]
NLTP1_SOLLC	4.432e-20	61.29	Non-specific lipid-transfer protein 1 OS=Solanum l...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS04_0005P03_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005P03, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN184708 ID=CN184708; Name=CN184708; organism=Citrus sinensis; type=EST; length=444bp
GCGTTTACATATTTAATATGACATAAAAAGCAAATATACAAACATGACAT
GAGAGTGAAACTCATACAAGTGGAGACTCGTTCGGACAAAGAAATTAACA
TAGATATTCTTTATTTATTTATTCTTCTCAGTCAATCATACTTGGAAAGT
CACAGAGCTCAAACTCAACTTCACCTGACCCTAGAGCAGTCGGTGCTGGG
GCTGATCTTGTAAGGAATTCTGACTCCACATTGACTAGGAAGGCCAGCGG
CAACATTAGGTTTGATGCCGCGGATTGTTCCGTAAGCTCGTTTCAAGCAG
TTGCATGCAGCTTGGCGGACAGGGGTGGTTCTGGCGGCGCCGTTGAGAGA
CCTGACGCCCGCTACAGCATGGCGGTGGAGGAAAACGCCCTCCAGTTCTC
AAGAAAGGGATGCATGGAGCCAAGGAGGGTGTCACCTGCCCGCA