CN184689 | Citrus Genome Database

Overview


Name	CN184689
Unique Name	CN184689
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	447

Libraries


Library Name	Type
Ruby Orange Developing Flower cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CN184689 vs. ExPASy Swiss-Prot
Match: RS24_ARATH (40S ribosomal protein S2-4 OS=Arabidopsis thaliana GN=RPS2D PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.419e-32
Identity = 38/43 (88.37%), Postives = 42/43 (97.67%), Query Frame = 1

Query:  319 NLKDEVMKIMPVQXQTRAGQRTRFKAFVVVGDTDGHVGLGVKC 447
            +LKDEVMKIMPVQ QTRAGQRTRFKAF+VVGD++GHVGLGVKC
Sbjct:   86 SLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKC 128

HSP 2 Score: 76.2554 bits (186), Expect = 4.419e-32
Identity = 34/41 (82.93%), Postives = 38/41 (92.68%), Query Frame = 3

Query:  192 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIG 314
            KWVPVTKLGRLV+EGKI  +EQIYLHSLP+KEYQIID L+G
Sbjct:   44 KWVPVTKLGRLVKEGKITKIEQIYLHSLPVKEYQIIDLLVG 84

[Close]

BLAST of CN184689 vs. ExPASy Swiss-Prot
Match: RS23_ARATH (40S ribosomal protein S2-3 OS=Arabidopsis thaliana GN=RPS2C PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.781e-30
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 1

Query:  322 LKDEVMKIMPVQXQTRAGQRTRFKAFVVVGDTDGHVGLGVKC 447
            LKDEVMKIMPVQ QTRAGQRTRFKAFVVVGD +GHVGLGVKC
Sbjct:   96 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKC 137

HSP 2 Score: 72.0182 bits (175), Expect = 1.781e-30
Identity = 33/41 (80.49%), Postives = 36/41 (87.80%), Query Frame = 3

Query:  192 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIG 314
            KWVPVTKLGRLV  G I+ +EQIYLHSLP+KEYQIID LIG
Sbjct:   53 KWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKEYQIIDMLIG 93

[Close]

BLAST of CN184689 vs. ExPASy Swiss-Prot
Match: RS22_ARATH (40S ribosomal protein S2-2 OS=Arabidopsis thaliana GN=RPS2B PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.781e-30
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 1

Query:  322 LKDEVMKIMPVQXQTRAGQRTRFKAFVVVGDTDGHVGLGVKC 447
            LKDEVMKIMPVQ QTRAGQRTRFKAFVVVGD +GHVGLGVKC
Sbjct:   95 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKC 136

HSP 2 Score: 72.0182 bits (175), Expect = 1.781e-30
Identity = 33/41 (80.49%), Postives = 36/41 (87.80%), Query Frame = 3

Query:  192 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIG 314
            KWVPVTKLGRLV + KI  LEQIYLHSLP+KEYQIID L+G
Sbjct:   52 KWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVG 92

[Close]

BLAST of CN184689 vs. ExPASy Swiss-Prot
Match: RS21_ARATH (40S ribosomal protein S2-1 OS=Arabidopsis thaliana GN=RPS2A PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.781e-30
Identity = 39/42 (92.86%), Postives = 40/42 (95.24%), Query Frame = 1

Query:  322 LKDEVMKIMPVQXQTRAGQRTRFKAFVVVGDTDGHVGLGVKC 447
            LKDEVMKIMPVQ QTRAGQRTRFKAFVVVGD +GHVGLGVKC
Sbjct:   95 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKC 136

HSP 2 Score: 72.0182 bits (175), Expect = 1.781e-30
Identity = 33/41 (80.49%), Postives = 36/41 (87.80%), Query Frame = 3

Query:  192 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIG 314
            KWVPVTKLGRLV + KI  LEQIYLHSLP+KEYQIID L+G
Sbjct:   52 KWVPVTKLGRLVADNKITKLEQIYLHSLPVKEYQIIDHLVG 92

[Close]

BLAST of CN184689 vs. ExPASy Swiss-Prot
Match: RS2_DROME (40S ribosomal protein S2 OS=Drosophila melanogaster GN=sop PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.132e-29
Identity = 35/44 (79.55%), Postives = 41/44 (93.18%), Query Frame = 1

Query:  316 TNLKDEVMKIMPVQXQTRAGQRTRFKAFVVVGDTDGHVGLGVKC 447
            ++LKDEV+KIMPVQ QTRAGQRTRFKAFV +GD +GH+GLGVKC
Sbjct:   83 SSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKC 126

HSP 2 Score: 71.2478 bits (173), Expect = 1.132e-29
Identity = 32/41 (78.05%), Postives = 39/41 (95.12%), Query Frame = 3

Query:  192 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIG 314
            +WVPVTKLGRLVREGKI+SLE+IYL+SLPIKE++IID  +G
Sbjct:   42 EWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLG 82

[Close]

BLAST of CN184689 vs. ExPASy Swiss-Prot
Match: RS2_SCHPO (40S ribosomal protein S2 OS=Schizosaccharomyces pombe GN=rps2 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.586e-28
Identity = 35/42 (83.33%), Postives = 40/42 (95.24%), Query Frame = 1

Query:  322 LKDEVMKIMPVQXQTRAGQRTRFKAFVVVGDTDGHVGLGVKC 447
            L DEVMK++PVQ QTRAGQRTRFKAFVV+GD+DGHVGLG+KC
Sbjct:   75 LNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDSDGHVGLGIKC 116

HSP 2 Score: 67.0106 bits (162), Expect = 1.586e-28
Identity = 29/37 (78.38%), Postives = 36/37 (97.30%), Query Frame = 3

Query:  192 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIID 302
            +WVPVTKLGRLV+ GKI+S+E+IYL+SLPIKEYQI+D
Sbjct:   33 EWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVD 69

[Close]

BLAST of CN184689 vs. ExPASy Swiss-Prot
Match: RS2_ICTPU (40S ribosomal protein S2 OS=Ictalurus punctatus GN=rps2 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.885e-27
Identity = 36/42 (85.71%), Postives = 39/42 (92.86%), Query Frame = 1

Query:  322 LKDEVMKIMPVQXQTRAGQRTRFKAFVVVGDTDGHVGLGVKC 447
            LKDEV+KIMPVQ QTRAGQRTRFKAFV +GD +GHVGLGVKC
Sbjct:   87 LKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKC 128

HSP 2 Score: 63.5438 bits (153), Expect = 4.885e-27
Identity = 29/41 (70.73%), Postives = 37/41 (90.24%), Query Frame = 3

Query:  192 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIG 314
            +WVPVTKLGRLV++ KI+SLE+IYL+SLPIKE +IID  +G
Sbjct:   44 EWVPVTKLGRLVKDMKIKSLEEIYLYSLPIKESEIIDFFLG 84

[Close]

BLAST of CN184689 vs. ExPASy Swiss-Prot
Match: RS2_URECA (40S ribosomal protein S2 OS=Urechis caupo GN=RPS2 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.357e-27
Identity = 36/42 (85.71%), Postives = 39/42 (92.86%), Query Frame = 1

Query:  322 LKDEVMKIMPVQXQTRAGQRTRFKAFVVVGDTDGHVGLGVKC 447
            LKDEV+KIMPVQ QTRAGQRTRFKAFV +GD +GHVGLGVKC
Sbjct:   88 LKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKC 129

HSP 2 Score: 63.1586 bits (152), Expect = 6.357e-27
Identity = 28/41 (68.29%), Postives = 37/41 (90.24%), Query Frame = 3

Query:  192 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIG 314
            +WVPVTKLGRLV++ KI++LE+IYL SLPIKE++IID  +G
Sbjct:   45 EWVPVTKLGRLVKDMKIKTLEEIYLFSLPIKEFEIIDFFLG 85

[Close]

BLAST of CN184689 vs. ExPASy Swiss-Prot
Match: RS2_RAT (40S ribosomal protein S2 OS=Rattus norvegicus GN=Rps2 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.076e-26
Identity = 36/43 (83.72%), Postives = 40/43 (93.02%), Query Frame = 1

Query:  319 NLKDEVMKIMPVQXQTRAGQRTRFKAFVVVGDTDGHVGLGVKC 447
            +LKDEV+KIMPVQ QTRAGQRTRFKAFV +GD +GHVGLGVKC
Sbjct:  101 SLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKC 143

HSP 2 Score: 62.003 bits (149), Expect = 1.076e-26
Identity = 28/41 (68.29%), Postives = 36/41 (87.80%), Query Frame = 3

Query:  192 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIG 314
            +W+PVTKLGRLV++ KI+SLE+IYL SLPIKE +IID  +G
Sbjct:   59 EWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLG 99

[Close]

BLAST of CN184689 vs. ExPASy Swiss-Prot
Match: RS2_MOUSE (40S ribosomal protein S2 OS=Mus musculus GN=Rps2 PE=1 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 1.076e-26
Identity = 36/43 (83.72%), Postives = 40/43 (93.02%), Query Frame = 1

Query:  319 NLKDEVMKIMPVQXQTRAGQRTRFKAFVVVGDTDGHVGLGVKC 447
            +LKDEV+KIMPVQ QTRAGQRTRFKAFV +GD +GHVGLGVKC
Sbjct:  101 SLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKC 143

HSP 2 Score: 62.003 bits (149), Expect = 1.076e-26
Identity = 28/41 (68.29%), Postives = 36/41 (87.80%), Query Frame = 3

Query:  192 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIG 314
            +W+PVTKLGRLV++ KI+SLE+IYL SLPIKE +IID  +G
Sbjct:   59 EWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLG 99

The following BLAST results are available for this feature:

BLAST of CN184689 vs. ExPASy Swiss-Prot

BLAST of CN184689 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36


Match Name	E-value	Identity	Description
RS24_ARATH	4.419e-32	88.37	40S ribosomal protein S2-4 OS=Arabidopsis thaliana...	[more]
RS23_ARATH	1.781e-30	92.86	40S ribosomal protein S2-3 OS=Arabidopsis thaliana...	[more]
RS22_ARATH	1.781e-30	92.86	40S ribosomal protein S2-2 OS=Arabidopsis thaliana...	[more]
RS21_ARATH	1.781e-30	92.86	40S ribosomal protein S2-1 OS=Arabidopsis thaliana...	[more]
RS2_DROME	1.132e-29	79.55	40S ribosomal protein S2 OS=Drosophila melanogaste...	[more]
RS2_SCHPO	1.586e-28	83.33	40S ribosomal protein S2 OS=Schizosaccharomyces po...	[more]
RS2_ICTPU	4.885e-27	85.71	40S ribosomal protein S2 OS=Ictalurus punctatus GN...	[more]
RS2_URECA	6.357e-27	85.71	40S ribosomal protein S2 OS=Urechis caupo GN=RPS2 ...	[more]
RS2_RAT	1.076e-26	83.72	40S ribosomal protein S2 OS=Rattus norvegicus GN=R...	[more]
RS2_MOUSE	1.076e-26	83.72	40S ribosomal protein S2 OS=Mus musculus GN=Rps2 P...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS04_0005O11_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005O11, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN184689 ID=CN184689; Name=CN184689; organism=Citrus sinensis; type=EST; length=447bp
GAGGCGCCTCGCATTTTTCACTCTCCCAAAGCCCAAACCCTAGCTTCAAA
CCCTAAACACACAAGAACAAAACCATGGCTGAACGAGGTGGCGAGCGCGG
TGCATTCGGACGCGGCTTCGGCCGTGGTGGACGGGGCGACCGTGGAGGCC
CACGTGGCCGTCGCCGCGCTGGACGCAGAGAGGAAGAAGAGAAGTGGGTC
CCAGTCACGAAACTCGGCCGTCTGGTGAGAGAAGGCAAGATCAGGAGCCT
CGAGCAAATCTACCTCCACTCGCTCCCAATCAAGGAGTATCAAATCATCG
ACACGCTTATCGGCCACAAATTTGAAGGACGAGGTCATGAAGATCATGCC
GGTGCAGNAACAGACACGTGCCGGTCAGAGGACGAGGTTCAAGGCCTTCG
TCGTCGTCGGTGACACGGACGGCCACGTGGGTCTTGGCGTTAAGTGC