CN184658

Overview
NameCN184658
Unique NameCN184658
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length345
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN184658 vs. ExPASy Swiss-Prot
Match: CML27_ARATH (Probable calcium-binding protein CML27 OS=Arabidopsis thaliana GN=CML27 PE=1 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 4.676e-16
Identity = 26/36 (72.22%), Postives = 30/36 (83.33%), Query Frame = -3 
Query:  146 GIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTTS 253
            G+ CSV+ C  MI PVDADGDGNVNFEEF+ MMT+S
Sbjct:  121 GMSCSVEDCTRMIGPVDADGDGNVNFEEFQKMMTSS 156

HSP 2 Score: 43.5134 bits (101), Expect = 4.676e-16
Identity = 19/23 (82.61%), Postives = 22/23 (95.65%), Query Frame = -2 
Query:  276 AELREAFDLYDQDKNGLISAEEV 344
            AE+R+AFDLYDQDKNGLISA E+
Sbjct:   91 AEIRDAFDLYDQDKNGLISASEL 113
[Close]
BLAST of CN184658 vs. ExPASy Swiss-Prot
Match: CML26_ARATH (Probable calcium-binding protein CML26 OS=Arabidopsis thaliana GN=CML26 PE=1 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 3.276e-13
Identity = 23/35 (65.71%), Postives = 28/35 (80.00%), Query Frame = -3 
Query:  149 GIKCSVDGCVAMIKPVDADGDGNVNFEEFRSMMTT 253
            G+ CSV+ CV MI  VD DGDGNVNFEEF+ MM++
Sbjct:  118 GMTCSVEDCVRMIGHVDTDGDGNVNFEEFQKMMSS 152

HSP 2 Score: 40.817 bits (94), Expect = 3.276e-13
Identity = 17/22 (77.27%), Postives = 21/22 (95.45%), Query Frame = -2 
Query:  276 ELREAFDLYDQDKNGLISAEEV 341
            E+REAFDLYDQ+KNGLIS+ E+
Sbjct:   89 EIREAFDLYDQNKNGLISSSEI 110
The following BLAST results are available for this feature:
BLAST of CN184658 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
CML27_ARATH4.676e-1672.22Probable calcium-binding protein CML27 OS=Arabidop... [more]
CML26_ARATH3.276e-1365.71Probable calcium-binding protein CML26 OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0005N16_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005N16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184658 ID=CN184658; Name=CN184658; organism=Citrus sinensis; type=EST; length=345bp
CAGAGTTTATTAACATTAAAAGTAGTAGACACAAGTAGGCACGGAGGAAA
ACGACAGCCTATAAACGGACGCAAGTTAATATCGGTACGGCCGACCATCG
AATCACCGTCGAAACCAAAATCTACGGCGCAGGACCAGGTTTAAGAGAAG
TAGTCATCATCGAACGAAACTCTTCAAAATTCACATTGCCATCACCATCG
GCATCCACCGGCTTAATCATCGCCACACATCCATCAACCGAGCACTTAAT
TCCGAGCCTGTTCAACACCAAATTCAACTTCCTCCGCCGAAATCAAGCCG
TTCTTGTCCTGATCGTAGAGATCAAACGCCTCGCGGAGCTCGGCC
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