DC887424

Overview
NameDC887424
Unique NameDC887424
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length487
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC887424_ssr430 microsatellite DC887424_ssr430:430..455. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig409 contig Csv1_Contig409:1..478. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DC887424 vs. ExPASy Swiss-Prot
Match: QCR8_SOLTU (Cytochrome b-c1 complex subunit 8 OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 9.822e-31
Identity = 60/72 (83.33%), Postives = 67/72 (93.06%), Query Frame = -1 
Query:  203 MGKQPVRMKAVVYALSPFQQKIMPGLWKDLTGKIHHKVSDNWISTILLLGPLVGTYAYVQNYQEKEKLAHRY 418
            MGKQPV++KAVVYA+SPFQQKIMPGLWKDL GKIHHKVS+NWIS  LLLGPLVGTY+YVQ++ EKEKL HRY
Sbjct:    1 MGKQPVKLKAVVYAISPFQQKIMPGLWKDLPGKIHHKVSENWISATLLLGPLVGTYSYVQHFLEKEKLEHRY 72
The following BLAST results are available for this feature:
BLAST of DC887424 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
QCR8_SOLTU9.822e-3183.33Cytochrome b-c1 complex subunit 8 OS=Solanum tuber... [more]
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Properties
Property NameValue
Genbank descriptionDC887424 EIC Citrus sinensis cDNA clone EIC0354 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887424 ID=DC887424; Name=DC887424; organism=Citrus sinensis; type=EST; length=487bp
TTATTTCATCAAAAGAAAGAGAAAATATTGCTCAGAATTTTGACAATAGT
TCTCAATCCATCAACAAAACCCACAAATCAAAACTACTGTAGTCTCAACT
ACATAGCAATTTCAATTATGTTTCACAACTTCAACAAGAGTTGTAGCTAA
TTCACAAGAACCTTAAGCTTCTGAAAAAATAGAGGCACATCAGCTTGCTT
CAATACCTGTGTGCCAACTTCTCCTTCTCCTGGTAATTTTGGACATAAGC
ATAGGTGCCGACGAGAGGACCGAGCAAAAGGATAGTGCTGATCCAATTAT
CGGAGACCTTGTGATGGATCTTACCGGTCAGATCCTTCCAAAGCCCCGGC
ATAATCTTTTGTTGAAATGGCGACAGTGCGTACACCACCGCCTTCATTCT
CACCGGCTGCTTTCCCATGTCTTTTGCTTTCTCTCTCTCTCTCTCTCTCT
CTCTCTTGTTTCTTAATTTCTCGCAATTTCTCGCCCT
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