CN184615

Overview
NameCN184615
Unique NameCN184615
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length384
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9911 contig Csv1_Contig9911:92..475. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN184615 vs. ExPASy Swiss-Prot
Match: Y5848_ARATH (Uncharacterized protein At5g48480 OS=Arabidopsis thaliana GN=At5g48480 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.614e-15
Identity = 46/94 (48.94%), Postives = 61/94 (64.89%), Query Frame = 3 
Query:   96 NGAAPEKAPATVASFTGMKPQLLVEAPKATDAVQFYKTAFGAVEIGRSVETKRKAEQELPLISCAQLEIAGSTFLVSDVSG--DSAAAQTVGTG 371
            NGA P +   T   FT  K  LLVEA K  DAV FYK+AFGA+E G S+  KRK +QELP +  ++L +AGS+F+V DVS     + A++ G+G
Sbjct:   12 NGAGPVE---THLVFTEFKQMLLVEAQKVGDAVTFYKSAFGAIESGHSLYPKRKLDQELPHVLSSELNLAGSSFVVCDVSSLPGFSTAKSEGSG 102
The following BLAST results are available for this feature:
BLAST of CN184615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5848_ARATH8.614e-1548.94Uncharacterized protein At5g48480 OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0005M15_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005M15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184615 ID=CN184615; Name=CN184615; organism=Citrus sinensis; type=EST; length=384bp
GAGGCTCTCTTTCTCTCTCCTAGGGTCAGGTTTCTTTCCTTTGTCTCTAG
ACTCCAAAACTCTCTCGCTCAATGGCTGATGTCCAGGAGGTTCAGAATGG
AGCTGCGCCGGAGAAGGCTCCTGCTACCGTGGCCAGCTTCACGGGGATGA
AGCCGCAGTTGCTTGTGGAAGCACCGAAGGCTACTGACGCTGTTCAGTTC
TACAAGACCGCGTTTGGTGCCGTGGAGATCGGCCGTAGCGTGGAAACCAA
ACGCAAGGCTGAACAGGAGCTCCCACTCATCTCCTGCGCTCAACTCGAGA
TTGCCGGCTCCACTTTCCTTGTCTCTGACGTTTCCGGTGACTCTGCTGCT
GCACAGACCGTGGGGACCGGATGCGTGCTTTGCT
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