DC887419

Overview
NameDC887419
Unique NameDC887419
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1517 contig Csv1_Contig1517:163..810. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887419 vs. ExPASy Swiss-Prot
Match: TPPC3_CHICK (Trafficking protein particle complex subunit 3 OS=Gallus gallus GN=TRAPPC3 PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 4.984e-52
Identity = 95/165 (57.58%), Postives = 129/165 (78.18%), Query Frame = -2
Query:  150 ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 644
            +++N+ELFTLTYGA V QL  D E  E+VNKQLD+MGYNIG+RLI++FLA+SNV RC DFRETA+VIAK+ FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L GV+RGALEMV M  +V +++D L+GD   E+++K ++++ +  P
Sbjct:   12 KKMNSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGYNIGVRLIEDFLARSNVGRCHDFRETADVIAKIAFKMYLGITPSITNWSPGGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGVLRGALEMVQMAVDVKFVQDTLKGDSVTEIRMKFIRRIEDNLP 176          
BLAST of DC887419 vs. ExPASy Swiss-Prot
Match: TPPC3_RAT (Trafficking protein particle complex subunit 3 OS=Rattus norvegicus GN=Trappc3 PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 7.196e-51
Identity = 94/165 (56.97%), Postives = 128/165 (77.58%), Query Frame = -2
Query:  150 ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 644
            +++++ELFTLTYGA V QL  D E  E+VNKQLD+MGYNIG+RLI++FLA+SNV RC DFRETA+VIAKV FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L GV+RGALEMV M  E  +++D L+GD   E++++ ++++ +  P
Sbjct:   12 KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 176          
BLAST of DC887419 vs. ExPASy Swiss-Prot
Match: TPPC3_MOUSE (Trafficking protein particle complex subunit 3 OS=Mus musculus GN=Trappc3 PE=1 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 7.196e-51
Identity = 94/165 (56.97%), Postives = 128/165 (77.58%), Query Frame = -2
Query:  150 ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 644
            +++++ELFTLTYGA V QL  D E  E+VNKQLD+MGYNIG+RLI++FLA+SNV RC DFRETA+VIAKV FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L GV+RGALEMV M  E  +++D L+GD   E++++ ++++ +  P
Sbjct:   12 KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDRMGYNIGVRLIEDFLARSNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSALIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 176          
BLAST of DC887419 vs. ExPASy Swiss-Prot
Match: TPPC3_HUMAN (Trafficking protein particle complex subunit 3 OS=Homo sapiens GN=TRAPPC3 PE=1 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 2.094e-50
Identity = 93/165 (56.36%), Postives = 128/165 (77.58%), Query Frame = -2
Query:  150 ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 644
            +++++ELFTLTYGA V QL  D E  E+VNKQLD+MG+NIG+RLI++FLA+SNV RC DFRETA+VIAKV FKM+LG+T +++NW   G   S+ILE+NPLVDFVELPD    L Y N+L GV+RGALEMV M  E  +++D L+GD   E++++ ++++ +  P
Sbjct:   12 KKMSSELFTLTYGALVTQLCKDYENDEDVNKQLDKMGFNIGVRLIEDFLARSNVGRCHDFRETADVIAKVAFKMYLGITPSITNWSPAGDEFSLILENNPLVDFVELPDNHSSLIYSNLLCGVLRGALEMVQMAVEAKFVQDTLKGDGVTEIRMRFIRRIEDNLP 176          
BLAST of DC887419 vs. ExPASy Swiss-Prot
Match: TPPC3_DICDI (Trafficking protein particle complex subunit 3 OS=Dictyostelium discoideum GN=trappc3 PE=3 SV=2)

HSP 1 Score: 194.897 bits (494), Expect = 3.023e-49
Identity = 100/167 (59.88%), Postives = 127/167 (76.05%), Query Frame = -2
Query:  150 VERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPDTCQ-GLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYP 647
            VE++N+ELFTLTYGA V QL+ D E++E+VN +L+QMGYNIGIRLI+EFLAKS + RC DF ETAEVIAKVGFKMFLGV A V +WDA+     + +EDNPL+DFVELPD  +  LYY NIL GV+RGALEMV MK + T+++  L  D   E++V L + + +  P
Sbjct:   16 VEKINSELFTLTYGALVTQLIKDYEDIEQVNIKLEQMGYNIGIRLIEEFLAKSGIGRCSDFIETAEVIAKVGFKMFLGVNAHVGDWDANRKEFHLTIEDNPLIDFVELPDQYKHKLYYSNILCGVMRGALEMVQMKVKCTFVKCTLSDDSTSEIKVVLEEVLSDMIP 182          
BLAST of DC887419 vs. ExPASy Swiss-Prot
Match: BET3_SCHPO (Transport protein particle subunit bet3 OS=Schizosaccharomyces pombe GN=bet3 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 5.901e-45
Identity = 93/171 (54.39%), Postives = 124/171 (72.51%), Query Frame = -2
Query:  138 VERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELP-DTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYPYKDD 647
            V++VNAELF LTYG+ V QL  D+   E+VN++LD+MGYNIGIRLI++FLAK+   RC DFRET E +AKVGFK+FL  +  +S+   DG    + L+DNPL +FVELP D  Q L+Y NIL GVIRGALEM+ M  +  ++RD+LRGD+  E++V L + + EE P  D+
Sbjct:   14 VDKVNAELFVLTYGSIVAQLCKDMN-YEKVNEELDKMGYNIGIRLIEDFLAKTEWPRCADFRETGETVAKVGFKVFLNFSPIISSVSDDGNTFVLTLDDNPLAEFVELPADARQKLWYSNILCGVIRGALEMLQMDVDAVFLRDILRGDEHTEIRVHLKRILKEEIPPGDE 183          
BLAST of DC887419 vs. ExPASy Swiss-Prot
Match: BET3_YEAST (Transport protein particle 22 kDa subunit OS=Saccharomyces cerevisiae GN=BET3 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 7.464e-40
Identity = 81/171 (47.37%), Postives = 120/171 (70.18%), Query Frame = -2
Query:  138 ERVNAELFTLTYGATVRQLLTDLE-EVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELP-DTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEEYPYKDD 644
            E++N ELFTLTYG+ V QL  D E +  +VN  L  MGYNIG RLI++FLA++ + RC +  +T+EV++K  FK+FL +T  ++NW  +    S+IL++NPL DFVELP D  + L+Y NIL GV++G+LEMV +  +V ++ D+LRGD   E++VKL + + +E P  +D
Sbjct:   23 EKINTELFTLTYGSIVAQLCQDYERDFNKVNDHLYSMGYNIGCRLIEDFLARTALPRCENLVKTSEVLSKCAFKIFLNITPNITNWSHNKDTFSLILDENPLADFVELPMDAMKSLWYSNILCGVLKGSLEMVQLDCDVWFVSDILRGDSQTEIKVKLNRILKDEIPIGED 193          
BLAST of DC887419 vs. ExPASy Swiss-Prot
Match: TPC3L_MOUSE (Trafficking protein particle complex subunit 3-like protein OS=Mus musculus GN=Bet3l PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.096e-38
Identity = 80/163 (49.08%), Postives = 113/163 (69.33%), Query Frame = -2
Query:  156 RVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFV-ELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEE 641
            ++N +LF LTYGA V QL  D E+ E+VNK LD+MGYNIG RL+++FLA+S V RC  + E   +IA+V FKM+LG+T +V+  ++     S+IL  NPL +FV ELP     L YCN+L G+IRGALEMV +   VT+++D L+GD   E+ +  LK++ E+
Sbjct:   13 KINKDLFVLTYGALVAQLCKDYEKDEDVNKYLDKMGYNIGTRLVEDFLARSCVRRCHSYSEIINIIAQVAFKMYLGITPSVTCHNSSRNEFSLILHKNPLAEFVEELPAGRSALCYCNLLCGIIRGALEMVHLAANVTFLQDRLKGDSVTEIGITFLKKLDEK 175          
BLAST of DC887419 vs. ExPASy Swiss-Prot
Match: TPC3L_HUMAN (Trafficking protein particle complex subunit 3-like protein OS=Homo sapiens GN=BET3L PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.192e-37
Identity = 80/163 (49.08%), Postives = 115/163 (70.55%), Query Frame = -2
Query:  156 RVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAKSNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFV-ELPDTCQGLYYCNILSGVIRGALEMVSMKTEVTWIRDVLRGDDAYELQVKLLKQVPEE 641
            ++N +LF LTYGA V QL  D E+ E+VN+ LD+MGY IG RL+++FLA+S V RC  + E  ++IA+V FKM+LG+T +V+  ++     S+ILE NPLV+FV ELP     L YCN+L G+IRGALEMV +  +VT+++D L+GD   E+ +  LK+  E+
Sbjct:   13 KINKDLFVLTYGALVAQLCKDYEKDEDVNQYLDKMGYGIGTRLVEDFLARSCVGRCHSYSEIIDIIAQVAFKMYLGITPSVTCNNSSKNEFSLILEKNPLVEFVEELPAGRSSLCYCNLLCGIIRGALEMVHLAADVTFLQDRLKGDSVTEIGITFLKKRDEK 175          
BLAST of DC887419 vs. ExPASy Swiss-Prot
Match: TPPC3_CAEBR (Probable trafficking protein particle complex subunit 3 OS=Caenorhabditis briggsae GN=CBG10062 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.907e-27
Identity = 64/137 (46.72%), Postives = 92/137 (67.15%), Query Frame = -2
Query:  243 ERVNAELFTLTYGATVRQLLTDLEEVEEVNKQLDQMGYNIGIRLIDEFLAK-SNVTRCVDFRETAEVIAKVGFKMFLGVTATVSNWDADGTCCSIILEDNPLVDFVELPD--TCQGLYYCNILSGVIRGALEMVSMK 644
            ++++AELF LTYGA V ++L D E+ ++V  QLD+MG+N+G RL D+FLAK +NV RCVD R+ A+V+ +     +LGV+AT S+W +      I LE NPL + V++P      GL Y  +++G IRGALE V  K
Sbjct:   13 KKMSAELFCLTYGAMVTEMLKDYEDPKDVTVQLDKMGFNMGTRLADDFLAKNANVPRCVDTRQIADVLCRNAIPCYLGVSATASSWSSGDREFIITLESNPLTELVQVPPNLVSAGLSYSQMIAGAIRGALEAVHFK 149          
The following BLAST results are available for this feature:
BLAST of DC887419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
TPPC3_CHICK4.984e-5257.58Trafficking protein particle complex subunit 3 OS=... [more]
TPPC3_RAT7.196e-5156.97Trafficking protein particle complex subunit 3 OS=... [more]
TPPC3_MOUSE7.196e-5156.97Trafficking protein particle complex subunit 3 OS=... [more]
TPPC3_HUMAN2.094e-5056.36Trafficking protein particle complex subunit 3 OS=... [more]
TPPC3_DICDI3.023e-4959.88Trafficking protein particle complex subunit 3 OS=... [more]
BET3_SCHPO5.901e-4554.39Transport protein particle subunit bet3 OS=Schizos... [more]
BET3_YEAST7.464e-4047.37Transport protein particle 22 kDa subunit OS=Sacch... [more]
TPC3L_MOUSE4.096e-3849.08Trafficking protein particle complex subunit 3-lik... [more]
TPC3L_HUMAN1.192e-3749.08Trafficking protein particle complex subunit 3-lik... [more]
TPPC3_CAEBR1.907e-2746.72Probable trafficking protein particle complex subu... [more]

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Properties
Property NameValue
Genbank descriptionDC887419 EIC Citrus sinensis cDNA clone EIC0346 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887419 ID=DC887419; Name=DC887419; organism=Citrus sinensis; type=EST; length=648bp
AAACCTATTCAAAGTTTCTCCCAAGTGAATATTTATACAGAGAACAAGCT
GTTAAAACTGATATTCTTTAGGGAAAATGAAGTGCAAGAATGTAAACTCG
GTATGTCCGCATCAGGCACCAAGACAGGATATTACTCATCATCCTTGTAT
GGATATTCTTCTGGGACTTGTTTCAGAAGTTTCACCTGCAGCTCATATGC
ATCATCCCCTCGAAGCACATCGCGGATCCAAGTGACTTCAGTTTTCATTG
AAACCATCTCTAGGGCCCCTCTAATGACTCCACTCAAGATGTTGCAATAA
TAAAGGCCTTGACAAGTATCAGGAAGCTCAACAAAATCCACCAGAGGATT
ATCTTCCAAAATTATACTGCAACATGTCCCATCAGCATCCCAGTTGCTCA
CGGTTGCAGTAACCCCTAAAAACATTTTGAAACCCACCTTTGCAATCACT
TCAGCAGTCTCCCTGAAGTCTACACACCTAGTGACATTAGATTTTGCTAG
AAACTCATCAATCAGTCGAATCCCAATATTATAGCCCATTTGATCAAGCT
GTTTGTTAACTTCCTCAACCTCCTCCAGATCCGTGAGCAGCTGACGCACA
GTGGCGCCGTAAGTTAATGTAAACAGCTCAGCATTCACGCGTTCCACG
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