CN184610

Overview
NameCN184610
Unique NameCN184610
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length676
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2799 contig Csv1_Contig2799:1..676. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184610 vs. ExPASy Swiss-Prot
Match: IF5A_MANES (Eukaryotic translation initiation factor 5A OS=Manihot esculenta PE=2 SV=2)

HSP 1 Score: 306.22 bits (783), Expect = 1.008e-82
Identity = 145/160 (90.62%), Postives = 157/160 (98.12%), Query Frame = 2
Query:   86 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGNHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIGPKS 565
            MSDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIK+RPCKV+EVSTSKTG HGHAKCHFVGIDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTE GNTKDDLRLPTDE LL+Q+KDGFAEGKDLV++VMS+MGEE+IC+LKDIGPK+
Sbjct:    1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVMEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTDENLLSQIKDGFAEGKDLVVSVMSAMGEERICSLKDIGPKN 160          
BLAST of CN184610 vs. ExPASy Swiss-Prot
Match: IF5A5_SOLTU (Eukaryotic translation initiation factor 5A-5 OS=Solanum tuberosum GN=EIF5A5 PE=2 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 1.008e-82
Identity = 146/159 (91.82%), Postives = 155/159 (97.48%), Query Frame = 2
Query:   86 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGNHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIGPK 562
            MSDEEHHFESKADAGASKTYPQQAGTIRK+G+IVIK+RPCKVVEVSTSKTG HGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+TLL Q+KDGFAEGKDLVL+VMS+MGEEQIC +KDIGPK
Sbjct:    1 MSDEEHHFESKADAGASKTYPQQAGTIRKSGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKDIGPK 159          
BLAST of CN184610 vs. ExPASy Swiss-Prot
Match: IF5A2_NICPL (Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia GN=EIF-5A2 PE=2 SV=1)

HSP 1 Score: 306.22 bits (783), Expect = 1.008e-82
Identity = 147/159 (92.45%), Postives = 154/159 (96.86%), Query Frame = 2
Query:   86 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGNHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIGPK 562
            MSDEEH FESKADAGASKTYPQQAGTIRKNG+IVIK RPCKVVEVSTSKTG HGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+ LLTQ+KDGFAEGKDLV++VMS+MGEEQICALKDIGPK
Sbjct:    1 MSDEEHQFESKADAGASKTYPQQAGTIRKNGHIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLTQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK 159          
BLAST of CN184610 vs. ExPASy Swiss-Prot
Match: IF5A1_SOLLC (Eukaryotic translation initiation factor 5A-1 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 305.834 bits (782), Expect = 1.317e-82
Identity = 146/159 (91.82%), Postives = 154/159 (96.86%), Query Frame = 2
Query:   86 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGNHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIGPK 562
            MSDEEHHFESKADAGASKTYPQQAGTIRK G+IVIK+RPCKVVEVSTSKTG HGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+TLL Q+KDGFAEGKDLVL+VMS+MGEEQIC +KDIGPK
Sbjct:    1 MSDEEHHFESKADAGASKTYPQQAGTIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLAQVKDGFAEGKDLVLSVMSAMGEEQICGIKDIGPK 159          
BLAST of CN184610 vs. ExPASy Swiss-Prot
Match: IF5A2_MEDSA (Eukaryotic translation initiation factor 5A-2 OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 6.536e-82
Identity = 144/159 (90.57%), Postives = 155/159 (97.48%), Query Frame = 2
Query:   86 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGNHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIGPK 562
            MSDEEHHFE  ADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTG HGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NG+TKDDL+LPTD++LLTQ+KDGFA+GKDLV++VMS+MGEEQICALKDIGPK
Sbjct:    1 MSDEEHHFEPAADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDDSLLTQIKDGFADGKDLVVSVMSAMGEEQICALKDIGPK 159          
BLAST of CN184610 vs. ExPASy Swiss-Prot
Match: IF5A1_TOBAC (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum GN=EIF-5A1 PE=3 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 6.536e-82
Identity = 144/159 (90.57%), Postives = 153/159 (96.23%), Query Frame = 2
Query:   86 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGNHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIGPK 562
            MSDEEHHFESKADAGASKTYPQQAGTIRKNG+IVIK+RPCKVVEVSTSKTG HGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+ LL  +KDGFAEGKDLVL+VMS+MGEEQIC +KD+GPK
Sbjct:    1 MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159          
BLAST of CN184610 vs. ExPASy Swiss-Prot
Match: IF5A1_NICPL (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia GN=EIF-5A1 PE=2 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 6.536e-82
Identity = 144/159 (90.57%), Postives = 153/159 (96.23%), Query Frame = 2
Query:   86 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGNHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIGPK 562
            MSDEEHHFESKADAGASKTYPQQAGTIRKNG+IVIK+RPCKVVEVSTSKTG HGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+ LL  +KDGFAEGKDLVL+VMS+MGEEQIC +KD+GPK
Sbjct:    1 MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDNLLALIKDGFAEGKDLVLSVMSAMGEEQICGIKDVGPK 159          
BLAST of CN184610 vs. ExPASy Swiss-Prot
Match: IF5A4_SOLLC (Eukaryotic translation initiation factor 5A-4 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 301.212 bits (770), Expect = 3.244e-81
Identity = 145/160 (90.62%), Postives = 152/160 (95.00%), Query Frame = 2
Query:   86 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGNHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIGPKS 565
            MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIK RPCKVVEVSTSKTG HGHAKCHFV IDIF+ KKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+TLL Q+K GF EGKDLVL+VMS+MGEEQICA+KDIG K+
Sbjct:    1 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDTLLNQVKGGFEEGKDLVLSVMSAMGEEQICAVKDIGTKT 160          
BLAST of CN184610 vs. ExPASy Swiss-Prot
Match: IF5A1_SOLTU (Eukaryotic translation initiation factor 5A-1/2 OS=Solanum tuberosum GN=EIF5A1 PE=2 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 4.236e-81
Identity = 145/160 (90.62%), Postives = 152/160 (95.00%), Query Frame = 2
Query:   86 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGNHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIGPKS 565
            MSDEEHHFESKADAGASKTYPQQAGTIRK+GYIVIK RPCKVVEVSTSKTG HGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD+ LL Q+K GF EGKDLVL+VMS+MGEEQICA+KDIG KS
Sbjct:    1 MSDEEHHFESKADAGASKTYPQQAGTIRKSGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDDALLNQVKGGFEEGKDLVLSVMSAMGEEQICAVKDIGTKS 160          
BLAST of CN184610 vs. ExPASy Swiss-Prot
Match: IF5A4_SOLTU (Eukaryotic translation initiation factor 5A-4 OS=Solanum tuberosum GN=EIF5A4 PE=2 SV=1)

HSP 1 Score: 299.286 bits (765), Expect = 1.233e-80
Identity = 144/159 (90.57%), Postives = 154/159 (96.86%), Query Frame = 2
Query:   86 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGNHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALKDIGPK 562
            MSDEEH FESKADAGASKTYPQQAGTIRK+GYIVIK RPCKVVEVSTSKTG HGHAKCHFV IDIF+GKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTD++LL+Q+KDGFAEGKDLV++VMS+MGEEQI ALKDIGPK
Sbjct:    1 MSDEEHQFESKADAGASKTYPQQAGTIRKSGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTDDSLLSQIKDGFAEGKDLVVSVMSAMGEEQINALKDIGPK 159          
The following BLAST results are available for this feature:
BLAST of CN184610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
IF5A_MANES1.008e-8290.63Eukaryotic translation initiation factor 5A OS=Man... [more]
IF5A5_SOLTU1.008e-8291.82Eukaryotic translation initiation factor 5A-5 OS=S... [more]
IF5A2_NICPL1.008e-8292.45Eukaryotic translation initiation factor 5A-2 OS=N... [more]
IF5A1_SOLLC1.317e-8291.82Eukaryotic translation initiation factor 5A-1 OS=S... [more]
IF5A2_MEDSA6.536e-8290.57Eukaryotic translation initiation factor 5A-2 OS=M... [more]
IF5A1_TOBAC6.536e-8290.57Eukaryotic translation initiation factor 5A-1 OS=N... [more]
IF5A1_NICPL6.536e-8290.57Eukaryotic translation initiation factor 5A-1 OS=N... [more]
IF5A4_SOLLC3.244e-8190.63Eukaryotic translation initiation factor 5A-4 OS=S... [more]
IF5A1_SOLTU4.236e-8190.63Eukaryotic translation initiation factor 5A-1/2 OS... [more]
IF5A4_SOLTU1.233e-8090.57Eukaryotic translation initiation factor 5A-4 OS=S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005M12_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005M12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184610 ID=CN184610; Name=CN184610; organism=Citrus sinensis; type=EST; length=676bp
GAGGCCTCGCTCGGTCGCCCCCCAGGCTATCTCAAAATCTCGCTCAGTAA
ATCGGCCGAGTCGGAATCAGTCAGTGCTTAAAGCGATGTCGGACGAGGAG
CATCACTTCGAGTCAAAGGCCGATGCCGGAGCCTCCAAGACTTACCCACA
GCAAGCTGGTACCATCCGTAAGAACGGCTACATCGTCATCAAAAGCCGTC
CCTGCAAGGTTGTGGAAGTCTCCACCTCCAAGACTGGAAATCACGGTCAT
GCTAAGTGCCACTTTGTTGGAATTGATATCTTCAGTGGAAAGAAGCTGGA
AGATATTGTCCCCTCTTCTCATAACTGTGATGTTCCCCATGTCAACCGTA
CCGACTATCAGTTGATTGATATTTCTGAGGATGGATTTGTGAGTTTGCTG
ACTGAAAATGGGAACACCAAGGATGATCTGAGGCTCCCAACCGATGAGAC
TCTGCTGACCCAGCTCAAGGACGGTTTTGCTGAGGGGAAGGACTTGGTTT
TGACTGTCATGTCTTCAATGGGCGAGGAGCAGATCTGTGCCCTCAAGGAT
ATTGGCCCAAAGTCGTAGTTGCGCGATATGTGATTATCTTCTGTGTCTGG
TTGCATCTGTTTTTTGGAAAAATATTTTAATCATCTAGAGTTTGCCTTTA
ATATTTGTAGCGTCTTTGTTTTGTGG
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