CN184603

Overview
NameCN184603
Unique NameCN184603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length511
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN184603 vs. ExPASy Swiss-Prot
Match: PP408_ARATH (Pentatricopeptide repeat-containing protein At5g39980, chloroplastic OS=Arabidopsis thaliana GN=At5g39980 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 3.718e-47
Identity = 87/118 (73.73%), Postives = 106/118 (89.83%), Query Frame = -3 
Query:  156 LNVIEVFEKMRSAGYFPDSHIIALVLNSYGKLREFETADDLYSEMQEEGCVFSDQVHFQMLSLYGARKDFNMLESLFERLDSDSNINKKELHHVVAGIYERANRLNDASRIMNRMNKR 509
            +NVIEVFEKMR+AGYFPDS++IA+VLN+YGK REFE AD +Y EMQEEGCVF D+VHFQMLSLY ++KDF M+ESLF+RL+SD N+N KELH VVA +YERA++LNDASR+MNRM +R
Sbjct:  553 VNVIEVFEKMRTAGYFPDSNVIAMVLNAYGKQREFEKADTVYREMQEEGCVFPDEVHFQMLSLYSSKKDFEMVESLFQRLESDPNVNSKELHLVVAALYERADKLNDASRVMNRMRER 670
The following BLAST results are available for this feature:
BLAST of CN184603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PP408_ARATH3.718e-4773.73Pentatricopeptide repeat-containing protein At5g39... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0005M08_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005M08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184603 ID=CN184603; Name=CN184603; organism=Citrus sinensis; type=EST; length=511bp
AAAAATTTTGCTTAAATCTACTAATCATGTGATTTGAAAACAGAGCAATG
TACAGATTAATTAGTAACAAAATTCAATTTACAACAACGGTACCGAGGAA
CTTATAGGATCCAGTAGAAGCGGGATTCTTAAACCAGTGATGAGTTAAAA
GTTCTTCTTTTGTTCATCCTATTCATGATTCGCGATGCATCGTTTAATCT
GTTTGCTCTTTCATAAATACCAGCAACGACATGATGCAACTCCTTTTTGT
TAATGTTTGAATCAGAGTCCAGTCTCTCAAAGAGCGACTCTAACATGTTG
AAGTCCTTCCTTGCACCATATAGACTCAGCATCTGGAAATGAACTTGATC
TGAAAAAACGCACCCTTCTTCCTGCATCTCTGAATACAAATCATCCGCCG
TCTCAAATTCTCGCAGCTTACCATAAGAATTCAGGACAAGAGCAATTATA
TGAGAATCAGGAAAGTACCCAGCACTTCTCATCTTCTCAAACACCTCAAT
AACATTTAGCA
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