CN184593

Overview
NameCN184593
Unique NameCN184593
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length464
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184593 vs. ExPASy Swiss-Prot
Match: TC159_ARATH (Translocase of chloroplast 159, chloroplastic OS=Arabidopsis thaliana GN=TOC159 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.126e-25
Identity = 59/112 (52.68%), Postives = 81/112 (72.32%), Query Frame = -3
Query:  124 VQCRGDTAYGANLELRLKDKDFPIXXXXXXXXXXLMNWRGDLNLMANVQSQFSVGRSSKMAVCIGLNKQRSGQVTVKLSSSEQLQMALIGIVPIALSGFRSICPGSAGQSTS 459
            ++ +GD+AYGANLE+RL++ DFPI          L+ WRGDL L AN+QSQ SVGR+SK+A+  GLN + SGQ+TV+ SSS+QLQ+AL  I+PIA+S ++SI P +     S
Sbjct: 1390 MRSQGDSAYGANLEVRLREADFPIGQDQSSFGLSLVKWRGDLALGANLQSQVSVGRNSKIALRAGLNNKMSGQITVRTSSSDQLQIALTAILPIAMSIYKSIRPEATNDKYS 1501          
BLAST of CN184593 vs. ExPASy Swiss-Prot
Match: TC132_ARATH (Translocase of chloroplast 132, chloroplastic OS=Arabidopsis thaliana GN=TOC132 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.286e-18
Identity = 43/95 (45.26%), Postives = 64/95 (67.37%), Query Frame = -3
Query:  178 AVQCRGDTAYGANLELRLKDKDFPIXXXXXXXXXXLMNWRGDLNLMANVQSQFSVGRSSKMAVCIGLNKQRSGQVTVKLSSSEQLQMALIGIVPI 462
            A+  RGD AYG  LE +L+DKD+P+          +M+W GDL +  N+QSQ  +GRSS +     LN + +GQV+V+++SSEQLQ+A++ IVP+
Sbjct: 1096 AMTSRGDFAYGGTLEAQLRDKDYPLGRFLTTLGLSVMDWHGDLAIGGNIQSQVPIGRSSNLIARANLNNRGAGQVSVRVNSSEQLQLAMVAIVPL 1190          
BLAST of CN184593 vs. ExPASy Swiss-Prot
Match: TC120_ARATH (Translocase of chloroplast 120, chloroplastic OS=Arabidopsis thaliana GN=TOC120 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 6.381e-18
Identity = 40/95 (42.11%), Postives = 63/95 (66.32%), Query Frame = -3
Query:  178 AVQCRGDTAYGANLELRLKDKDFPIXXXXXXXXXXLMNWRGDLNLMANVQSQFSVGRSSKMAVCIGLNKQRSGQVTVKLSSSEQLQMALIGIVPI 462
            A+  RGD AYG  LE + +DKD+P+          +M+W GDL +  N+QSQ  +GRSS +     LN + +GQV+++++SSEQLQ+A++ +VP+
Sbjct:  978 AMTSRGDVAYGGTLEAQFRDKDYPLGRFLSTLGLSVMDWHGDLAIGGNIQSQVPIGRSSNLIARANLNNRGAGQVSIRVNSSEQLQLAVVALVPL 1072          
The following BLAST results are available for this feature:
BLAST of CN184593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
TC159_ARATH4.126e-2552.68Translocase of chloroplast 159, chloroplastic OS=A... [more]
TC132_ARATH1.286e-1845.26Translocase of chloroplast 132, chloroplastic OS=A... [more]
TC120_ARATH6.381e-1842.11Translocase of chloroplast 120, chloroplastic OS=A... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0005M03_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005M03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184593 ID=CN184593; Name=CN184593; organism=Citrus sinensis; type=EST; length=464bp
TTGATGCTCAGCTGAAAATTGAACATTATTGTTTTTTTACAGGGAAAAGC
GATTAGTATTATGAAAACAAATCCAATCGGGACAGCCATAGCCATTGATA
ACGAAGAGATGCTGCACCTACTATGATGTGCTTTGGCCAGCAGAACCGGG
ACAAATACTTCTAAAACCGGACAGTGCAATAGGAACAATACCAATGAGAG
CCATCTGCAATTGCTCGGAGCTGCTTAATTTGACAGTAACTTGCCCACTT
CGCTGCTTGTTCAATCCAATGCAGACTGCCATCTTAGAGCTCCGTCCTAC
AGAGAACTGAGACTGTACGTTGGCCATCAGATTCAGGTCACCTCTCCAGT
TCATCAATGACAGACCCAGACTGGAATTGTTGTTGCCGATAGGAAAATCT
TTATCCTTGAGTCGCAGTTCCAGGTTGGCTCCGTATGCCGTGTCACCGCG
ACATTGCACAGCTC
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