DC887409

Overview
NameDC887409
Unique NameDC887409
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC887409_ssr137 microsatellite DC887409_ssr137:137..160. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DC887409 vs. ExPASy Swiss-Prot
Match: ARR9_ARATH (Two-component response regulator ARR9 OS=Arabidopsis thaliana GN=ARR9 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.404e-15
Identity = 35/56 (62.50%), Postives = 50/56 (89.29%), Query Frame = -2
Query:  333 KLMQVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 500
            K+ + S+++D+PVV+MSSENVP+R++ CLEEGAEEF LKPVRL+DL KL+P ++K+
Sbjct:   94 KVKESSAFRDIPVVIMSSENVPARISRCLEEGAEEFFLKPVRLADLNKLKPHMMKT 149          
BLAST of DC887409 vs. ExPASy Swiss-Prot
Match: ARR8_ARATH (Two-component response regulator ARR8 OS=Arabidopsis thaliana GN=ARR8 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.095e-13
Identity = 32/56 (57.14%), Postives = 49/56 (87.50%), Query Frame = -2
Query:  333 KLMQVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKS 500
            K+ + ++++ +PVV+MSSENVP+R++ CLEEGAEEF LKPV+L+DL KL+P ++K+
Sbjct:   92 KVKESAAFRSIPVVIMSSENVPARISRCLEEGAEEFFLKPVKLADLTKLKPHMMKT 147          
BLAST of DC887409 vs. ExPASy Swiss-Prot
Match: ARR5_ARATH (Two-component response regulator ARR5 OS=Arabidopsis thaliana GN=ARR5 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.601e-12
Identity = 30/60 (50.00%), Postives = 50/60 (83.33%), Query Frame = -2
Query:  321 KLMQVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSPNRS 500
            K+ + S+++++PVV+MSSEN+  R+  CLEEGAE+FLLKPV+L+D+++L+  L+K+  R+
Sbjct:  101 KIKESSAFREIPVVIMSSENILPRIDRCLEEGAEDFLLKPVKLADVKRLRDSLMKAEERA 160          
BLAST of DC887409 vs. ExPASy Swiss-Prot
Match: ARR6_ARATH (Two-component response regulator ARR6 OS=Arabidopsis thaliana GN=ARR6 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 7.848e-12
Identity = 31/55 (56.36%), Postives = 47/55 (85.45%), Query Frame = -2
Query:  336 KLMQVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 500
            K+ + S++++VPVV+MSSEN+  R+  CLEEGAE+FLLKPV+LSD+++L+  L+K
Sbjct:  100 KIKESSAFREVPVVIMSSENILPRIDRCLEEGAEDFLLKPVKLSDVKRLRDSLMK 154          
BLAST of DC887409 vs. ExPASy Swiss-Prot
Match: ARR4_ARATH (Two-component response regulator ARR4 OS=Arabidopsis thaliana GN=ARR4 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.339e-11
Identity = 32/62 (51.61%), Postives = 49/62 (79.03%), Query Frame = -2
Query:  315 KLMQVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSPNRSCG 500
            K+ + S++++VPVV+MSSENV +R+  CLEEGA++FLLKPV+L+D+++L+  L K    S G
Sbjct:  109 KIKESSNFREVPVVIMSSENVLTRIDRCLEEGAQDFLLKPVKLADVKRLRSHLTKDVKLSNG 170          
BLAST of DC887409 vs. ExPASy Swiss-Prot
Match: ARR3_ARATH (Two-component response regulator ARR3 OS=Arabidopsis thaliana GN=ARR3 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.748e-11
Identity = 31/55 (56.36%), Postives = 47/55 (85.45%), Query Frame = -2
Query:  336 KLMQVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLK 500
            K+ + +S+K+VPVV+MSSENV +R+  CLEEGAE+FLLKPV+L+D+++L+  L +
Sbjct:  108 KIKESTSFKEVPVVIMSSENVMTRIDRCLEEGAEDFLLKPVKLADVKRLRSYLTR 162          
BLAST of DC887409 vs. ExPASy Swiss-Prot
Match: ARR7_ARATH (Two-component response regulator ARR7 OS=Arabidopsis thaliana GN=ARR7 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.895e-11
Identity = 28/61 (45.90%), Postives = 49/61 (80.33%), Query Frame = -2
Query:  318 KLMQVSSWKDVPVVVMSSENVPSRVTMCLEEGAEEFLLKPVRLSDLEKLQPRLLKSPNRSC 500
            K+ + S++++VPVV+MSSEN+  R+  CL+EGAEEFLLKPV+L+D+++++  ++++    C
Sbjct:   99 KIKESSAFREVPVVIMSSENILPRIQECLKEGAEEFLLKPVKLADVKRIKQLIMRNEAEEC 159          
The following BLAST results are available for this feature:
BLAST of DC887409 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
ARR9_ARATH3.404e-1562.50Two-component response regulator ARR9 OS=Arabidops... [more]
ARR8_ARATH1.095e-1357.14Two-component response regulator ARR8 OS=Arabidops... [more]
ARR5_ARATH4.601e-1250.00Two-component response regulator ARR5 OS=Arabidops... [more]
ARR6_ARATH7.848e-1256.36Two-component response regulator ARR6 OS=Arabidops... [more]
ARR4_ARATH1.339e-1151.61Two-component response regulator ARR4 OS=Arabidops... [more]
ARR3_ARATH1.748e-1156.36Two-component response regulator ARR3 OS=Arabidops... [more]
ARR7_ARATH3.895e-1145.90Two-component response regulator ARR7 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionDC887409 EIC Citrus sinensis cDNA clone EIC0331 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887409 ID=DC887409; Name=DC887409; organism=Citrus sinensis; type=EST; length=621bp
GCTTCATAAAAAAGTCTGTCAACTTACATTAGCATCAATACAACACAGCT
GAACGCAAGCCATGTATTTAGGAAATTTAAAATGGCACTCTTTCTAAACT
TATACCACATTCTTCCATTAAACCCTAAAATTTAAAAATAATAATAATAA
TAATAATAATAAAAGGAGAATTACACGACAGCTACTTCTTTCATTTTAGG
CCTCCTCTCTGGAGCCTCAGCCGACAATGCCTTCCTCTTGCTAAAAGCAC
TATTGGTGCTGCTTTTATAGTTGCTAGTCTCATTCTTGTTATCGTTGTCG
CTGTCTTCATTGTTGCCGCATGATCGGTTCGGTGATTTCAACAGACGGGG
CTGAAGCTTCTCCAAATCTGATAACCGAACTGGCTTCAACAGAAACTCTT
CAGCTCCTTCTTCCAAGCACATGGTGACTCTTGAAGGTACATTTTCGGAA
GACATGACCACGACCGGTACGTCTTTCCAGGAGGATACCTGCATTAATTT
GTGATCAGCAAGACTCTGACTTTGACAATACGTAAATTTTCAGTAGTTGA
TAATGTGAAGAACTACATTCTCTCAAGTTCGGGAAATTAACAAGTAGAGG
CTAGTGTTTTTTGACCTTGAG
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