DC887401

Overview
NameDC887401
Unique NameDC887401
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length443
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DC887401 vs. ExPASy Swiss-Prot
Match: UBC27_ARATH (Ubiquitin carrier protein E2 27 OS=Arabidopsis thaliana GN=UBC27 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.242e-25
Identity = 57/79 (72.15%), Postives = 69/79 (87.34%), Query Frame = -1 
Query:  207 LLSAPAPDDPQDAVVAQQYLKDHQTFLSTARYWTESFAKTSSLGVEEKVQKLVEMGFPESQVRSTLEIVGGDENMALEK 443
            LLSAP P DPQDAVVA+QY+K++Q F+STARYWTE+FAK SSL  EEKV++LVEMGF ++QVRS +E  GGDEN+ALEK
Sbjct:  112 LLSAPEPKDPQDAVVAEQYMKNYQVFVSTARYWTETFAKKSSL--EEKVKRLVEMGFGDAQVRSAIESSGGDENLALEK 188
The following BLAST results are available for this feature:
BLAST of DC887401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UBC27_ARATH1.242e-2572.15Ubiquitin carrier protein E2 27 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionDC887401 EIC Citrus sinensis cDNA clone EIC0320 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887401 ID=DC887401; Name=DC887401; organism=Citrus sinensis; type=EST; length=443bp
CTTGAATTCTTTAAGCTGTCATTCGCACAAATAGTTCCAGCTACAAATTC
TTCCATTAGTGGAAGTTGCCAGTCAATAAGGTGGATGCAGCCACAACAGA
AGAAATGCCTAAGCGAATCACCAGCAGTCCAAAATACTCTTTCCTCAGTA
TAAGATTCCGCTGTCTCTAGATTTGGCTTCTGCAGCAGACTCTAACTGGA
GAGAAGCTTTTCAAGAGCCATGTTTTCATCACCACCAACAATCTCCAAAG
TACTCCTCACCTGAGATTCAGGGAAACCCATCTCCACAAGTTTCTGTACC
TTTTCCTCTACCCCAAGGGATGAGGTCTTGGCAAAAGATTCTGTCCAGTA
CCGAGCTGTGCTGAGAAAAGTCTGATGATCTTTAAGATACTGTTGTGCCA
CCACAGCATCTTGAGGATCATCAGGTGCAGGAGCTGATAACAG
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