CN184577

Overview
NameCN184577
Unique NameCN184577
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length217
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9425 contig Csv1_Contig9425:50..265. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN184577 vs. ExPASy Swiss-Prot
Match: NDUA5_ARATH (Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial OS=Arabidopsis thaliana GN=At5g52840 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.268e-24
Identity = 35/40 (87.50%), Postives = 37/40 (92.50%), Query Frame = 3 
Query:   96 NKTLKEIQAVPPDEGYRKAVESFTRQRLKVCQEEEDWEQI 215
            +KTLKEIQAVP DEGYRKAVESFTRQRL VC+EEEDWE I
Sbjct:   38 SKTLKEIQAVPEDEGYRKAVESFTRQRLNVCKEEEDWEMI 77

HSP 2 Score: 58.9214 bits (141), Expect = 1.268e-24
Identity = 28/36 (77.78%), Postives = 31/36 (86.11%), Query Frame = 2 
Query:    2 GRPLMAKVKQTTGITGLDVVPNAREVLINLYKQNAK 109
            GRPL+AKVKQTTGI GLDVVPNAR VLI+LY +  K
Sbjct:    7 GRPLLAKVKQTTGIVGLDVVPNARAVLIDLYSKTLK 42
The following BLAST results are available for this feature:
BLAST of CN184577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NDUA5_ARATH1.268e-2487.50Probable NADH dehydrogenase [ubiquinone] 1 alpha s... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0005L17_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005L17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184577 ID=CN184577; Name=CN184577; organism=Citrus sinensis; type=EST; length=217bp
CGGACGGCCATTGATGGCCAAGGTGAAACAAACGACTGGGATCACGGGAC
TGGATGTAGTCCCCAACGCGAGGGAAGTTCTGATCAATCTTTACAAACAA
AACGCTAAAGGAGATCCAAGCCGTTCCTCCGGACGAAGGGTACCGCAAGG
CCGTCGAAAGCTTCACACGGCAACGTTTGAAGGTCTGTCAAGAGGAAGAG
GACTGGGAACAGATCGA
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