DC887399

Overview
NameDC887399
Unique NameDC887399
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length502
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13179 contig Csv1_Contig13179:517..1018. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RHN1_NICPL (Ras-related protein RHN1 OS=Nicotiana plumbaginifolia GN=RHN1 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 1.354e-33
Identity = 69/107 (64.49%), Postives = 87/107 (81.31%), Query Frame = -1 
Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 502
            AGQERY +LAP+YYRG      VYDITS DSF +A+ WV+ELQK G+P++VMAL GNKADL ++R+V A++   YAE+NG+FF+ETSAKTA N+N +F EIAKRLPR
Sbjct:   67 AGQERYHSLAPMYYRGAAAAIIVYDITSSDSFARAKKWVQELQKQGNPNMVMALAGNKADLEDRRKVTAEEARLYAEENGLFFMETSAKTAVNVNAIFYEIAKRLPR 173
[Close]
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB5_TOBAC (Ras-related protein Rab5 OS=Nicotiana tabacum GN=RAB5 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 3.941e-33
Identity = 68/107 (63.55%), Postives = 86/107 (80.37%), Query Frame = -1 
Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 502
            AGQERY +LAP+YYRG      VYDITS +S  +A+ WV+ELQK G+P++VMAL GNKADL +KR+V A++   YAE+NG+FF+ETSAKTA N+N +F EIAKRLPR
Sbjct:   67 AGQERYHSLAPMYYRGAAAAIIVYDITSTESLARAKKWVQELQKQGNPNMVMALAGNKADLEDKRKVTAEEARLYAEENGLFFMETSAKTATNVNDIFYEIAKRLPR 173
[Close]
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB5A_DICDI (Ras-related protein Rab-5A OS=Dictyostelium discoideum GN=rab5A PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 4.817e-31
Identity = 65/107 (60.75%), Postives = 81/107 (75.70%), Query Frame = -1 
Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 502
            AGQERY  LAP+YYRG      VYDI S DSF +A  WVKELQ+ GSP+IV+AL GNK DL  KR+V   +  +YAE+NG+ F+ETSAKT+ N+N+LF EIAK+LP+
Sbjct:   66 AGQERYHTLAPMYYRGAQAAIVVYDIRSEDSFERAIKWVKELQRQGSPNIVIALAGNKLDLAAKRKVETAEAQQYAEENGLLFMETSAKTSQNVNELFVEIAKKLPK 172
[Close]
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB5C_BOVIN (Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.024e-29
Identity = 63/107 (58.88%), Postives = 80/107 (74.77%), Query Frame = -1 
Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 502
            AGQERY +LAP+YYRG      VYDIT+ D+F +A+ WVKELQ+  SP+IV+AL GNKADL  KR V  Q+   YAE N + F+ETSAKTA N+N++F  IAK+LP+
Sbjct:   78 AGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEIFMAIAKKLPK 184
[Close]
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RHA1_ARATH (Ras-related protein RHA1 OS=Arabidopsis thaliana GN=RHA1 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.643e-29
Identity = 62/107 (57.94%), Postives = 82/107 (76.64%), Query Frame = -1 
Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 502
            AGQERY +LAP+YYRG      V+DIT+  SF +A+ WV+ELQ  G+P++VMAL GNKADL + R+V A++   YA++N +FF+ETSAKTA N+  +F EIAKRLPR
Sbjct:   67 AGQERYHSLAPMYYRGAAAAIIVFDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVSAEEAEIYAQENSLFFMETSAKTATNVKDIFYEIAKRLPR 173
[Close]
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB5C_CHICK (Ras-related protein Rab-5C OS=Gallus gallus GN=RAB5C PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.643e-29
Identity = 63/107 (58.88%), Postives = 80/107 (74.77%), Query Frame = -1 
Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 502
            AGQERY +LAP+YYRG      VYDIT+ D+F +A+ WVKELQ+  SP+IV+AL GNKADL  KR V  QD   YA+ N + F+ETSAKTA N+N++F  IAK+LP+
Sbjct:   78 AGQERYHSLAPMYYRGAQAAIVVYDITNTDTFVRAKNWVKELQRQASPNIVIALAGNKADLATKRAVDFQDAQTYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPK 184
[Close]
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB5C_PONAB (Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5C PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 4.509e-29
Identity = 62/107 (57.94%), Postives = 80/107 (74.77%), Query Frame = -1 
Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 502
            AGQERY +LAP+YYRG      VYDIT+ D+F +A+ WVKELQ+  SP+IV+AL GNKADL  KR V  Q+   YA+ N + F+ETSAKTA N+N++F  IAK+LP+
Sbjct:   78 AGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPK 184
[Close]
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB5C_MOUSE (Ras-related protein Rab-5C OS=Mus musculus GN=Rab5c PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 4.509e-29
Identity = 62/107 (57.94%), Postives = 80/107 (74.77%), Query Frame = -1 
Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 502
            AGQERY +LAP+YYRG      VYDIT+ D+F +A+ WVKELQ+  SP+IV+AL GNKADL  KR V  Q+   YA+ N + F+ETSAKTA N+N++F  IAK+LP+
Sbjct:   78 AGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPK 184
[Close]
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB5C_HUMAN (Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5C PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 4.509e-29
Identity = 62/107 (57.94%), Postives = 80/107 (74.77%), Query Frame = -1 
Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 502
            AGQERY +LAP+YYRG      VYDIT+ D+F +A+ WVKELQ+  SP+IV+AL GNKADL  KR V  Q+   YA+ N + F+ETSAKTA N+N++F  IAK+LP+
Sbjct:   78 AGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPK 184
[Close]
BLAST of DC887399 vs. ExPASy Swiss-Prot
Match: RAB5C_CANFA (Ras-related protein Rab-5C OS=Canis familiaris GN=RAB5C PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 4.509e-29
Identity = 62/107 (57.94%), Postives = 80/107 (74.77%), Query Frame = -1 
Query:  182 AGQERYAALAPLYYRGXXXXXXVYDITSPDSFNKAQXWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 502
            AGQERY +LAP+YYRG      VYDIT+ D+F +A+ WVKELQ+  SP+IV+AL GNKADL  KR V  Q+   YA+ N + F+ETSAKTA N+N++F  IAK+LP+
Sbjct:   78 AGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPK 184
The following BLAST results are available for this feature:
BLAST of DC887399 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 318
Match NameE-valueIdentityDescription
RHN1_NICPL1.354e-3364.49Ras-related protein RHN1 OS=Nicotiana plumbaginifo... [more]
RAB5_TOBAC3.941e-3363.55Ras-related protein Rab5 OS=Nicotiana tabacum GN=R... [more]
RAB5A_DICDI4.817e-3160.75Ras-related protein Rab-5A OS=Dictyostelium discoi... [more]
RAB5C_BOVIN2.024e-2958.88Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C ... [more]
RHA1_ARATH2.643e-2957.94Ras-related protein RHA1 OS=Arabidopsis thaliana G... [more]
RAB5C_CHICK2.643e-2958.88Ras-related protein Rab-5C OS=Gallus gallus GN=RAB... [more]
RAB5C_PONAB4.509e-2957.94Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5... [more]
RAB5C_MOUSE4.509e-2957.94Ras-related protein Rab-5C OS=Mus musculus GN=Rab5... [more]
RAB5C_HUMAN4.509e-2957.94Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5... [more]
RAB5C_CANFA4.509e-2957.94Ras-related protein Rab-5C OS=Canis familiaris GN=... [more]

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Properties
Property NameValue
Genbank descriptionDC887399 EIC Citrus sinensis cDNA clone EIC0318 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887399 ID=DC887399; Name=DC887399; organism=Citrus sinensis; type=EST; length=502bp
AANAGAAAGTTTCCAAGTGAGATTCATAAATCATAATGCAGTTGCAAAAT
GAAACAGGGAACCACATCATATATCACAATATACACAAATCTTTGATATG
ACAAACTGACAGGATTCGGCGTTACATCAGCAGACACAGCAGTTCAGATT
CCAGAATCCACAATCATGAAGAAGGTGATGGGCGGGGAAGTCGCTTAGCA
ATTTCCTCAAACAGCTGATTTATATTATCTGCAGTCTTGGCCGATGTTTC
GATAAAGAACATCCCATTCTTCTCCGCATACTCAATGCCATCTTGAGCTG
GTACTTCTCGCTTCTCATGAAGATCAGCCTTGTTACCAACTAAAGCCATG
ACTATGTCAGGACTTCCATGTTTTTGTAGCTCCTTAACCCAGNATTGCGC
TTTGTTGAATGAATCTGGACTAGTTATATCATACACAACAACTGCGACTG
CAGCACCTCTGTAATATAGTGGTGCCAGAGCAGCATATCTTTCTTGACCA
GC
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