CN184565

Overview
NameCN184565
Unique NameCN184565
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length358
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184565 vs. ExPASy Swiss-Prot
Match: MSRA_SOLLC (Peptide methionine sulfoxide reductase (Fragment) OS=Solanum lycopersicum GN=E4 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.182e-15
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = -3
Query:  144 AEEYHQQYLEKGGGRGSKQSAEKGCDEPIRCYG 242
            AEEYHQQYLEKGGGRG KQSA KGC++PIRCYG
Sbjct:  164 AEEYHQQYLEKGGGRGCKQSAAKGCNDPIRCYG 196          

HSP 2 Score: 32.3426 bits (72), Expect = 4.182e-15
Identity = 17/29 (58.62%), Postives = 22/29 (75.86%), Query Frame = -2
Query:  241 ESMEAKQLEMKDQRKIVTEILPAEEILQS 327
            ES+EAKQ E  D +KIVTEILPA+   ++
Sbjct:  137 ESLEAKQKEFMD-KKIVTEILPAKRFYRA 164          
BLAST of CN184565 vs. ExPASy Swiss-Prot
Match: MSRA_FRAAN (Peptide methionine sulfoxide reductase OS=Fragaria ananassa PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 1.551e-14
Identity = 27/33 (81.82%), Postives = 32/33 (96.97%), Query Frame = -3
Query:  144 AEEYHQQYLEKGGGRGSKQSAEKGCDEPIRCYG 242
            AEEYHQQYLEKGGG G+KQSA+KGC++PI+CYG
Sbjct:  159 AEEYHQQYLEKGGGNGNKQSAQKGCNDPIKCYG 191          

HSP 2 Score: 31.5722 bits (70), Expect = 1.551e-14
Identity = 16/30 (53.33%), Postives = 23/30 (76.67%), Query Frame = -2
Query:  241 EESMEAKQLEMKDQRKIVTEILPAEEILQS 330
            ++S EAKQ E KD+R +VTEILPA+   ++
Sbjct:  131 KKSKEAKQKEFKDKR-VVTEILPAKRFYRA 159          
The following BLAST results are available for this feature:
BLAST of CN184565 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
MSRA_SOLLC4.182e-1587.88Peptide methionine sulfoxide reductase (Fragment) ... [more]
MSRA_FRAAN1.551e-1481.82Peptide methionine sulfoxide reductase OS=Fragaria... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0005L10_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005L10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184565 ID=CN184565; Name=CN184565; organism=Citrus sinensis; type=EST; length=358bp
CAAGGCAGTTTTTTACAGAAAAGCAACGCACAGATTTATATGGTAATTAA
TCAAAGCAAGCTTAACAAGAGTTCGCTTTTCGTTATTAAGAAACGTAGAT
ATGATAATAAACAAGGTTCAAGCTATAAAAAGGTCAAACGTCAACCGTAG
CATCTGATGGGCTCATCGCAGCCCTTTTCAGCAGACTGCTTGGAGCCTCT
GCCACCACCCTTTTCAAGATACTGCTGATGGTACTCCTCGGCTCTGTAAA
ATCTCTTCCGCAGGAAGAATCTCTGTTACAATCTTCCTCTGATCCTTCAT
CTCCAACTGCTTTGCTTCCATTGACTCCTCGGGCTAAACGAGCCTGTGTC
TCATTGTA
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