CN184540

Overview
NameCN184540
Unique NameCN184540
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length437
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2431 contig Csv1_Contig2431:1..437. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN184540 vs. ExPASy Swiss-Prot
Match: BT1_MAIZE (Protein brittle-1, chloroplastic/amyloplastic OS=Zea mays GN=BT1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 8.783e-13
Identity = 32/73 (43.84%), Postives = 56/73 (76.71%), Query Frame = 3 
Query:  222 LSGALAGAMTKAVLAPLETIRTRMVFG-VGSKNISGSFIEVIEQQGWQGLWAGNGINMLRIIPTQAIELGTFE 437
            +SGA+AGA+++  +APLETIRT ++ G +G  +++G F  +++ +GW GL+ GN +N+LR+ P++AIE  T++
Sbjct:  139 VSGAIAGAVSRTFVAPLETIRTHLMVGSIGVDSMAGVFQWIMQNEGWTGLFRGNAVNVLRVAPSKAIEHFTYD 211
The following BLAST results are available for this feature:
BLAST of CN184540 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
BT1_MAIZE8.783e-1343.84Protein brittle-1, chloroplastic/amyloplastic OS=Z... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0005K19_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184540 ID=CN184540; Name=CN184540; organism=Citrus sinensis; type=EST; length=437bp
GAGGGTTTGTCGTCATGTCCCAAAAATCCCCATCTCAGAAGAAGAAGTAC
AGAGCTGGGGTTTTTGGGGACATATACAGTGTCATGATGCTGCCTAAAGA
GCTTGAGATTGAGAAAGATGTATCTGTTTCGGTTCCTTCCCCTTTAGAGC
TTCGCTCTCAGCTTCCTGATTTCAAGGCTGCCTTTCAAGATTTCATGAAG
GTTAGGGAAGTCAGGGAGTTTCTTAGTGGGGCTTTAGCGGGAGCTATGAC
TAAAGCTGTTCTTGCTCCTCTTGAGACCATCAGGACGAGAATGGTGTTTG
GTGTTGGATCCAAAAATATTTCTGGTAGTTTCATTGAGGTAATTGAGCAG
CAGGGTTGGCAAGGACTATGGGCCGGCAATGGAATTAATATGCTCCGAAT
AATCCCCACCCAGGCAATTGAGCTTGGAACATTTGAG
back to top