CN184538

Overview
NameCN184538
Unique NameCN184538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length558
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig239 contig Csv1_Contig239:110..666. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184538 vs. ExPASy Swiss-Prot
Match: TIP11_ARATH (Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1 PE=1 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.232e-57
Identity = 90/125 (72.00%), Postives = 95/125 (76.00%), Query Frame = 1
Query:   46 MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVT 420
            MPIRNIA+G P EAT PDAL+AALAEFISTLIFV AG GSGMAFNKLT NGA TPS                     NISGGHVNPAVTFGAF+GGNI+LLRGILYWIAQLLGS VACL+LKF T
Sbjct:    1 MPIRNIAIGRPDEATRPDALKAALAEFISTLIFVVAGSGSGMAFNKLTENGATTPSGLVAAAVAHAFGLFVAVSVGANISGGHVNPAVTFGAFIGGNITLLRGILYWIAQLLGSVVACLILKFAT 125          

HSP 2 Score: 68.1662 bits (165), Expect = 1.232e-57
Identity = 36/54 (66.67%), Postives = 38/54 (70.37%), Query Frame = 2
Query:  398 ACF-LSSLPNGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS 556
            AC  L     G    AF LS+GVG  NA VFEIVMTFGLVYTVYATA+DPK GS
Sbjct:  117 ACLILKFATGGLAVPAFGLSAGVGVLNAFVFEIVMTFGLVYTVYATAIDPKNGS 170          
BLAST of CN184538 vs. ExPASy Swiss-Prot
Match: TIP12_ORYSJ (Probable aquaporin TIP1-2 OS=Oryza sativa subsp. japonica GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 4.582e-54
Identity = 77/125 (61.60%), Postives = 87/125 (69.60%), Query Frame = 1
Query:   46 MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVT 420
            MP+  IAVG P E +HPD  +AA+AEFIS LIFVFAG GSGMAF+KLT  G  TPS                     NISGGHVNPAVTFGAFVGGNISL++ ++YW+AQLLGS VACLLLK  T
Sbjct:    1 MPVSRIAVGAPGELSHPDTAKAAVAEFISMLIFVFAGSGSGMAFSKLTDGGGTTPSGLIAASLAHALALFVAVAVGANISGGHVNPAVTFGAFVGGNISLVKAVVYWVAQLLGSVVACLLLKIAT 125          

HSP 2 Score: 78.9518 bits (193), Expect = 4.582e-54
Identity = 39/53 (73.58%), Postives = 43/53 (81.13%), Query Frame = 2
Query:  398 ACFLSSLPNG-QTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKG 553
            AC L  +  G     AF+LS+GVGAWNAVVFEIVMTFGLVYTVYATA+DPKKG
Sbjct:  117 ACLLLKIATGGAAVGAFSLSAGVGAWNAVVFEIVMTFGLVYTVYATAVDPKKG 169          
BLAST of CN184538 vs. ExPASy Swiss-Prot
Match: TIP12_ARATH (Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2 PE=1 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 2.248e-53
Identity = 82/126 (65.08%), Postives = 89/126 (70.63%), Query Frame = 1
Query:   46 MPIRNIAVGHPREAT-HPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVT 420
            MP RNIA+G  +E   HP+ALRAALAEFISTLIFVFAG GSG+AFNK+T NGA TPS                     NISGGHVNPAVTFG  +GGNI+LLRGILYWIAQLLGS  AC LL F T
Sbjct:    1 MPTRNIAIGGVQEEVYHPNALRAALAEFISTLIFVFAGSGSGIAFNKITDNGATTPSGLVAAALAHAFGLFVAVSVGANISGGHVNPAVTFGVLLGGNITLLRGILYWIAQLLGSVAACFLLSFAT 126          

HSP 2 Score: 73.9442 bits (180), Expect = 2.248e-53
Identity = 38/54 (70.37%), Postives = 43/54 (79.63%), Query Frame = 2
Query:  398 ACFLSSLPNG-QTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS 556
            ACFL S   G +   AF LS+GVG+ NA+VFEIVMTFGLVYTVYATA+DPK GS
Sbjct:  118 ACFLLSFATGGEPIPAFGLSAGVGSLNALVFEIVMTFGLVYTVYATAVDPKNGS 171          
BLAST of CN184538 vs. ExPASy Swiss-Prot
Match: TIP11_ORYSJ (Probable aquaporin TIP1-1 OS=Oryza sativa subsp. japonica GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.249e-53
Identity = 85/125 (68.00%), Postives = 93/125 (74.40%), Query Frame = 1
Query:   46 MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVT 420
            MPIRNIAVG  +E  HP AL+AALAEFISTLIFVFAG+GSGMAF+KLT  GA TP+                     NISGGHVNPAVTFGAFVGGNI+L RG+LYWIAQLLGSTVAC LL+F T
Sbjct:    1 MPIRNIAVGSHQEVYHPGALKAALAEFISTLIFVFAGQGSGMAFSKLTGGGATTPAGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWIAQLLGSTVACFLLRFST 125          

HSP 2 Score: 65.4698 bits (158), Expect = 2.249e-53
Identity = 35/54 (64.81%), Postives = 38/54 (70.37%), Query Frame = 2
Query:  398 ACFLSSLPNGQ-TTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS 556
            ACFL     G   T  F L+ GV  W A+V EIVMTFGLVYTVYATA+DPKKGS
Sbjct:  117 ACFLLRFSTGGLATGTFGLT-GVSVWEALVLEIVMTFGLVYTVYATAVDPKKGS 169          
BLAST of CN184538 vs. ExPASy Swiss-Prot
Match: TIP12_MAIZE (Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 2.444e-52
Identity = 79/125 (63.20%), Postives = 89/125 (71.20%), Query Frame = 1
Query:   46 MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVT 420
            MP+  IAVG P E +HPD  +AA+AEFISTLIFVFAG GSGMAF+KLT  GA TP+                     NISGGHVNPAVTFGAFVGGNISLL+ ++YW+AQLLGS VACLLLK  T
Sbjct:    1 MPVSRIAVGAPGELSHPDTAKAAVAEFISTLIFVFAGSGSGMAFSKLTDGGAATPAGLIAASLAHALALFVAVSVGANISGGHVNPAVTFGAFVGGNISLLKALVYWVAQLLGSVVACLLLKIAT 125          

HSP 2 Score: 70.4774 bits (171), Expect = 2.444e-52
Identity = 36/53 (67.92%), Postives = 41/53 (77.36%), Query Frame = 2
Query:  398 ACFLSSLPNGQTT-SAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKG 553
            AC L  +  G     AF+LS+GVGA NAVV E+VMTFGLVYTVYATA+DPKKG
Sbjct:  117 ACLLLKIATGGAALGAFSLSAGVGAMNAVVLEMVMTFGLVYTVYATAVDPKKG 169          
BLAST of CN184538 vs. ExPASy Swiss-Prot
Match: TIP13_ARATH (Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3 PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.058e-52
Identity = 76/125 (60.80%), Postives = 88/125 (70.40%), Query Frame = 1
Query:   46 MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVT 420
            MPI  IA+G P EA+ PDA+RAA AEF S +IFVFAG+GSGMA+ KLT +G  TP+                     N+SGGHVNPAVTFGAF+GGNI+LLR ILYWIAQLLG+ VACLLLK  T
Sbjct:    1 MPINRIAIGTPGEASRPDAIRAAFAEFFSMVIFVFAGQGSGMAYGKLTGDGPATPAGLVAASLSHAFALFVAVSVGANVSGGHVNPAVTFGAFIGGNITLLRAILYWIAQLLGAVVACLLLKVST 125          

HSP 2 Score: 74.7146 bits (182), Expect = 7.058e-52
Identity = 38/53 (71.70%), Postives = 42/53 (79.25%), Query Frame = 2
Query:  398 ACFLSSLPNG-QTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKG 553
            AC L  +  G   T+AF+LS GV  WNAVVFEIVMTFGLVYTVYATA+DPKKG
Sbjct:  117 ACLLLKVSTGGMETAAFSLSYGVTPWNAVVFEIVMTFGLVYTVYATAVDPKKG 169          
BLAST of CN184538 vs. ExPASy Swiss-Prot
Match: TIP11_MAIZE (Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.038e-51
Identity = 79/125 (63.20%), Postives = 89/125 (71.20%), Query Frame = 1
Query:   46 MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVT 420
            MPI  IA+G  +E  HP AL+AA AEFISTLIFVFAG+GSGMAF+KLT  G  TP+                     NISGGHVNPAVTFGAFVGGNI+L RG+LYW+AQLLGSTVAC LL+F T
Sbjct:    1 MPINRIALGSHQEVYHPGALKAAFAEFISTLIFVFAGQGSGMAFSKLTGGGPTTPAGLIAAAVAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLFRGLLYWVAQLLGSTVACFLLRFST 125          

HSP 2 Score: 68.1662 bits (165), Expect = 2.038e-51
Identity = 36/54 (66.67%), Postives = 39/54 (72.22%), Query Frame = 2
Query:  398 ACFLSSLPNG-QTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS 556
            ACFL     G Q T  F L+ GV  W A+V EIVMTFGLVYTVYATA+DPKKGS
Sbjct:  117 ACFLLRFSTGGQATGTFGLT-GVSVWEALVLEIVMTFGLVYTVYATAVDPKKGS 169          
BLAST of CN184538 vs. ExPASy Swiss-Prot
Match: TIP1_MEDTR (Probable aquaporin TIP-type OS=Medicago truncatula GN=AQP1 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 9.996e-51
Identity = 84/125 (67.20%), Postives = 93/125 (74.40%), Query Frame = 1
Query:   46 MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVT 420
            MPIRNIAVG P+EATHPD L+A LAEFIST IFVFAG GSG+A+NKLT++GA TP+                     NISGGHVNPAVTFGAFVGGNI+LLRGI+Y IAQLLGS VA  LL FVT
Sbjct:    1 MPIRNIAVGTPQEATHPDTLKAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIVYIIAQLLGSIVASALLVFVT 125          

HSP 2 Score: 62.003 bits (149), Expect = 9.996e-51
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 2
Query:  440 AFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS 556
            AF LS GVG   A+V EIVMTFGLVYTVYATA+DPKKG+
Sbjct:  131 AFGLSEGVGVGPALVLEIVMTFGLVYTVYATAVDPKKGN 169          
BLAST of CN184538 vs. ExPASy Swiss-Prot
Match: TIP1_MEDSA (Probable aquaporin TIP-type OS=Medicago sativa GN=MCP1 PE=2 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 2.611e-48
Identity = 82/125 (65.60%), Postives = 91/125 (72.80%), Query Frame = 1
Query:   46 MPIRNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKLTHNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVT 420
            MPIRNIAVG P+EATHPD L+A LAEFIST IFVFAG GSG+A+NKLT++GA TP+                     NISGGHVNPAV FGAFVGGNI+LLRGI+Y IAQLLGS V   LL FVT
Sbjct:    1 MPIRNIAVGTPQEATHPDTLKAGLAEFISTFIFVFAGSGSGIAYNKLTNDGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAV-FGAFVGGNITLLRGIVYIIAQLLGSIVCSALLVFVT 124          

HSP 2 Score: 62.003 bits (149), Expect = 2.611e-48
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 2
Query:  440 AFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS 556
            AF LS GVG   A+V EIVMTFGLVYTVYATA+DPKKG+
Sbjct:  130 AFGLSEGVGVGPALVLEIVMTFGLVYTVYATAVDPKKGN 168          
BLAST of CN184538 vs. ExPASy Swiss-Prot
Match: TIP31_ARATH (Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 8.433e-40
Identity = 63/127 (49.61%), Postives = 77/127 (60.63%), Query Frame = 1
Query:   55 RNIAVGHPREATHPDALRAALAEFISTLIFVFAGEGSGMAFNKL-----THNGANTPSXXXXXXXXXXXXXXXXXXXXXNISGGHVNPAVTFGAFVGGNISLLRGILYWIAQLLGSTVACLLLKFVT 420
            R    G   EATHPD++RA LAEF+ST +FVFA EGS ++ +KL      H G NTP                      N+SGGHVNPAVTFGA VGG ++ +R I YWIAQLLG+ +ACLLL+  T
Sbjct:    7 RAYGFGRADEATHPDSIRATLAEFLSTFVFVFAAEGSILSLDKLYWEHAAHAGTNTPGGLILVALAHAFALFAAVSAAINVSGGHVNPAVTFGALVGGRVTAIRAIYYWIAQLLGAILACLLLRLTT 133          

HSP 2 Score: 62.003 bits (149), Expect = 8.433e-40
Identity = 31/54 (57.41%), Postives = 38/54 (70.37%), Query Frame = 2
Query:  398 ACFLSSLP-NGQTTSAFALSSGVGAWNAVVFEIVMTFGLVYTVYATALDPKKGS 556
            AC L  L  NG     F L+SGVGA N +V EI++TFGLVY VY+T +DPK+GS
Sbjct:  125 ACLLLRLTTNGMRPVGFRLASGVGAVNGLVLEIILTFGLVYVVYSTLIDPKRGS 178          
The following BLAST results are available for this feature:
BLAST of CN184538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
TIP11_ARATH1.232e-5772.00Aquaporin TIP1-1 OS=Arabidopsis thaliana GN=TIP1-1... [more]
TIP12_ORYSJ4.582e-5461.60Probable aquaporin TIP1-2 OS=Oryza sativa subsp. j... [more]
TIP12_ARATH2.248e-5365.08Aquaporin TIP1-2 OS=Arabidopsis thaliana GN=TIP1-2... [more]
TIP11_ORYSJ2.249e-5368.00Probable aquaporin TIP1-1 OS=Oryza sativa subsp. j... [more]
TIP12_MAIZE2.444e-5263.20Aquaporin TIP1-2 OS=Zea mays GN=TIP1-2 PE=2 SV=1[more]
TIP13_ARATH7.058e-5260.80Aquaporin TIP1-3 OS=Arabidopsis thaliana GN=TIP1-3... [more]
TIP11_MAIZE2.038e-5163.20Aquaporin TIP1-1 OS=Zea mays GN=TIP1-1 PE=2 SV=1[more]
TIP1_MEDTR9.996e-5167.20Probable aquaporin TIP-type OS=Medicago truncatula... [more]
TIP1_MEDSA2.611e-4865.60Probable aquaporin TIP-type OS=Medicago sativa GN=... [more]
TIP31_ARATH8.433e-4049.61Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005K18_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005K18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184538 ID=CN184538; Name=CN184538; organism=Citrus sinensis; type=EST; length=558bp
CTTATCACACCCCAAAGGTTCAATCTTCATCGTTTGATCTCCATCATGCC
GATCAGAAACATTGCCGTTGGCCATCCCCGTGAGGCGACTCATCCAGATG
CCCTAAGGGCAGCCCTAGCAGAGTTCATCTCAACTCTAATATTTGTCTTT
GCCGGTGAAGGCTCGGGCATGGCCTTCAACAAGCTCACTCACAACGGCGC
CAACACCCCCTCCGGCCTCGTCGCCGCCTCTGTTGCTCACGCTTTCGCCC
TTTTCGTTGCTGTCGCCGTTGGCGCCAACATTTCCGGTGGCCACGTTAAT
CCTGCTGTCACCTTTGGCGCCTTCGTTGGAGGTAACATCTCCCTTCTACG
AGGCATCCTCTACTGGATCGCCCAGCTTCTTGGATCCACCGTCGCATGCT
TGCTTCTTAAGTTCGTTACCCAACGGCCAGACCACATCTGCTTTTGCTCT
CTCATCTGGAGTTGGTGCATGGAACGCAGTCGTTTTCGAGATCGTGATGA
CATTCGGACTAGTGTACACAGTGTATGCCACAGCCCTGGACCCTAAGAAG
GGAAGCTT
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