CN184536

Overview
NameCN184536
Unique NameCN184536
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN184536 vs. ExPASy Swiss-Prot
Match: APH1_ARATH (Gamma-secretase subunit APH1-like OS=Arabidopsis thaliana GN=At2g31440 PE=2 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 3.141e-56
Identity = 107/157 (68.15%), Postives = 120/157 (76.43%), Query Frame = -1 
Query:  159 WKVYKRLEDTLDAFADRVGKPRLFLTDKMQIXXXXXXXXXXXXXVFFCLSLLTPAFGPATFYVDRCPQMPFFLISAIIALAFVTIHTFSMVIAFNGYAEGNTTDQYFVPVVHLVAGMVTLVNFASGGCVVGXXXXXXXXXXXXLHCGKMVWRRLTAS 629
            WKVYKRLED LD+FADR+ +PRLFLTDK+QI             VFFCLSLLTPAFGPATFYV+RC ++PFFLISAIIALAFVTIHTFSMVIAF GYA+GN  DQ  VPV+HL AGM+TLVNFAS GCV+G            +HCGKMVW+RL  S
Sbjct:   86 WKVYKRLEDVLDSFADRISRPRLFLTDKLQIALAGGLGHGVAHAVFFCLSLLTPAFGPATFYVERCSKVPFFLISAIIALAFVTIHTFSMVIAFEGYAKGNKVDQIIVPVIHLTAGMLTLVNFASEGCVIGVPLLYLVASLTLVHCGKMVWQRLLES 242
The following BLAST results are available for this feature:
BLAST of CN184536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
APH1_ARATH3.141e-5668.15Gamma-secretase subunit APH1-like OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0005K17_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005K17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184536 ID=CN184536; Name=CN184536; organism=Citrus sinensis; type=EST; length=629bp
TTTGATTGATTAGTATGGATGTCAGTTCACAAAATAAATGGTTTTGAGAA
CCTTCCAAGATACATTTGTGTAGTACATTACATGTTCAGCTGAGCTATAA
ATTTTGAGAGTGACTTTCCAATTGCTATGGATCACTAAGAATTACCCTGC
ATGCTTCAGCTTGCTGTTAATCTTCTCCACACCATTTTCCCACAGTGTAA
CAGGATCAAGCTTGCCAGGATATAGAGCAGAGGAATCCCAACGACACAAC
CACCAGATGCAAAATTTACCAATGTCACCATTCCGGCCACAAGATGAACA
ACAGGAACAAAATACTGGTCCGTTGTATTCCCTTCAGCATACCCATTAAA
TGCAATGACCATTGAGAAAGTGTGAATTGTAACAAATGCAAGAGCAATGA
TTGCAGAAATAAGAAAAAAGGGCATCTGGGGGCATCTGTCAACATAAAAT
GTAGCTGGACCAAATGCTGGAGTTAACAGGCTAAGACAAAAAAACACAGC
ATGGGCCACACCATGGCCTAATCCACCAGCAAGAGCAATTTGCATCTTAT
CAGTCAGAAATAAGCGTGGTTTTCCAACTCTGTCAGCAAAAGCATCCAAC
GTGTCTTCCAACCTCTTGTAAACTTTCCA
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