CN184535

Overview
NameCN184535
Unique NameCN184535
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length606
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9784 contig Csv1_Contig9784:56..661. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184535 vs. ExPASy Swiss-Prot
Match: Y1926_ARATH (UPF0678 fatty acid-binding protein-like protein At1g79260 OS=Arabidopsis thaliana GN=At1g79260 PE=1 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 3.021e-61
Identity = 116/154 (75.32%), Postives = 134/154 (87.01%), Query Frame = 2
Query:   11 PVHPAIAPISYLLGTWRGQGSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKLGSGEPMHAESGYWRPNPDGSIEVVIAQSTGLVEVQKGTYNAEEKVIKLQSELVGNASKVREVSRVFELVNGELRYVVQMATNHLTSLRPHLKAVLRKL 472
            PVHP +AP+SYLLGTWRGQG G YPTI +F YGEE+ F+HSG KPVIAYTQKTWKL SG PMHAESGY+RP PDGSIEVVIAQSTGLVEVQKGTYN +E+ IKL+S+LVGNASKV+E+SR FELV+G+L YVV+M+T     L+PHLKA+L KL
Sbjct:   15 PVHPFVAPLSYLLGTWRGQGEGEYPTIPSFRYGEEIRFSHSG-KPVIAYTQKTWKLESGAPMHAESGYFRPRPDGSIEVVIAQSTGLVEVQKGTYNVDEQSIKLKSDLVGNASKVKEISREFELVDGKLSYVVRMSTT-TNPLQPHLKAILDKL 166          
BLAST of CN184535 vs. ExPASy Swiss-Prot
Match: Y1995_MYCMM (UPF0678 fatty acid-binding protein-like protein MMAR_1995 OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=MMAR_1995 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.085e-26
Identity = 66/157 (42.04%), Postives = 96/157 (61.15%), Query Frame = 2
Query:   14 VHPAIAPISYLLGTWRGQGSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKLGSGEPMHAESGYWRPNPDGSIEVVIAQSTGLVEVQKGTYNAEEKVIKLQS-----ELVGNASKVREVSRVFELVNGELRYVVQMATNHLTSLRPHLKAVLRK 469
            +HP +  ++ LLGTW GQGSG YPTI  F+Y EE+ F+H G KP + Y QKT  +  G P+HAE+GY R    G +E+V+A  +G+ E++ GTY+A   VI+++       +   A +V  +SR F +V  EL Y ++M    L  L+ HL A LR+
Sbjct:    5 LHPDLDALAPLLGTWAGQGSGEYPTIEPFEYLEEVVFSHVG-KPFLVYAQKTRAVADGAPLHAETGYLRVPKPGQVELVLAHPSGITEIEVGTYSASGGVIEMEMVTTAIGMTPTAKEVTALSRSFRMVGDELSYRLRMGAVGL-PLQHHLGARLRR 159          
BLAST of CN184535 vs. ExPASy Swiss-Prot
Match: Y3360_MYCUA (UPF0678 fatty acid-binding protein-like protein MUL_3360 OS=Mycobacterium ulcerans (strain Agy99) GN=MUL_3360 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.416e-26
Identity = 65/157 (41.40%), Postives = 96/157 (61.15%), Query Frame = 2
Query:   14 VHPAIAPISYLLGTWRGQGSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKLGSGEPMHAESGYWRPNPDGSIEVVIAQSTGLVEVQKGTYNAEEKVIKLQS-----ELVGNASKVREVSRVFELVNGELRYVVQMATNHLTSLRPHLKAVLRK 469
            +HP +  ++ LLGTW GQG+G YPTI  F+Y EE+ F+H G KP + Y QKT  +  G P+HAE+GY R    G +E+V+A  +G+ E++ GTY+A   VI+++       +   A +V  +SR F +V  EL Y ++M    L  L+ HL A LR+
Sbjct:    5 LHPDLDALAPLLGTWAGQGAGEYPTIEPFEYLEEVVFSHVG-KPFLVYAQKTRAVADGTPLHAETGYLRVPKPGQVELVLAHPSGITEIEVGTYSASGGVIEMEMVTTAIGMTPTAKEVTALSRSFRMVGDELSYRLRMGAVGL-PLQHHLGARLRR 159          
BLAST of CN184535 vs. ExPASy Swiss-Prot
Match: Y2833_MYCPA (UPF0678 fatty acid-binding protein-like protein MAP_2833c OS=Mycobacterium paratuberculosis GN=MAP_2833c PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.156e-26
Identity = 65/157 (41.40%), Postives = 95/157 (60.51%), Query Frame = 2
Query:   14 VHPAIAPISYLLGTWRGQGSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKLGSGEPMHAESGYWRPNPDGSIEVVIAQSTGLVEVQKGTYNAEEKVIKLQSE-----LVGNASKVREVSRVFELVNGELRYVVQMATNHLTSLRPHLKAVLRK 469
            +HP +A ++ LLGTW G+GSG YPTI  FDY EE+ F+H G KP +AY QKT     G+P+HAE+GY R    G +E+V+A  +G+ E++ G+Y     +I+++       L  +A +V  ++R F +   EL Y VQM       L+ HL AVL +
Sbjct:    5 LHPDLAALAPLLGTWTGRGSGKYPTIQPFDYLEEVTFSHVG-KPFLAYAQKTRAAADGKPLHAETGYLRVPQPGRLELVLAHPSGITEIEVGSYAVTGGLIEMRMSTTSIGLTPSAKEVTALARWFRIDGDELSYSVQMGAVG-QPLQDHLAAVLHR 159          
BLAST of CN184535 vs. ExPASy Swiss-Prot
Match: Y3611_MYCA1 (UPF0678 fatty acid-binding protein-like protein MAV_3611 OS=Mycobacterium avium (strain 104) GN=MAV_3611 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.566e-25
Identity = 64/157 (40.76%), Postives = 93/157 (59.24%), Query Frame = 2
Query:   14 VHPAIAPISYLLGTWRGQGSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKLGSGEPMHAESGYWRPNPDGSIEVVIAQSTGLVEVQKGTYNAEEKVIKLQSE-----LVGNASKVREVSRVFELVNGELRYVVQMATNHLTSLRPHLKAVLRK 469
            +HP +A ++ LLGTW G+GSG YPTI  FDY EE+ F+H G KP +AY QKT     G+P+HAE+GY R    G +E+V+A  +G+ E++ G+Y     +I+++       L   A +V  + R F +   +L Y VQM       L+ HL AVL +
Sbjct:    5 LHPDLAALAPLLGTWTGRGSGKYPTIQPFDYLEEVTFSHVG-KPFLAYAQKTRAAADGKPLHAETGYLRVPQPGRLELVLAHPSGITEIEVGSYAVTGGLIEMRMSTTSIGLTPTAKEVTALGRWFRIDGDKLSYSVQMGAVG-QPLQDHLAAVLHR 159          
BLAST of CN184535 vs. ExPASy Swiss-Prot
Match: Y449_MYCVP (UPF0678 fatty acid-binding protein-like protein Mvan_0449 OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=Mvan_0449 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.489e-25
Identity = 66/160 (41.25%), Postives = 94/160 (58.75%), Query Frame = 2
Query:   14 VHPAIAPISYLLGTWRGQGSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKLGSGEPMHAESGYWRPNPDGSIEVVIAQSTGLVEVQKGTYNAEEKVIKLQSELV-------GNASKVREVSRVFELVNGELRYVVQMATNHLTSLRPHLKAVLRKL 472
            +HP +A ++ LLGTW G+GSG YPTI  F Y EE+ F H G KP + Y Q+T     G P+HAE+GY R +    IE ++A  TG+ E+Q+G   A+   +++  ELV       G+A +V +V R  EL    L Y ++MA      L+ HL AVLR++
Sbjct:    8 LHPDVAALAPLLGTWVGEGSGEYPTIEPFGYTEEITFGHVG-KPFLTYAQRTRAADDGRPLHAETGYLRASAPDRIEWILAHPTGITEIQEGQLTADGDGLRM--ELVSSSIGRSGSAKEVTDVGRSIELRGDTLTYTLRMAAVG-QPLQHHLSAVLRRV 163          
BLAST of CN184535 vs. ExPASy Swiss-Prot
Match: Y6574_MYCS2 (UPF0678 fatty acid-binding protein-like protein MSMEG_6574 OS=Mycobacterium smegmatis GN=MSMEG_6574 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.261e-24
Identity = 66/160 (41.25%), Postives = 91/160 (56.88%), Query Frame = 2
Query:    8 VPVHPAIAPISYLLGTWRGQGSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKLGSGEPMHAESGYWR-PNPDGSIEVVIAQSTGLVEVQKGTYNAEEKVIKLQSE-----LVGNASKVREVSRVFELVNGELRYVVQMATNHLTSLRPHLKAVLRK 469
            + +HP IAP++ LLGTW G G+G YPTI +F+Y EE+ F H  GKP + Y Q+T     G P+HAE GY R P PD  +E V+A  TG+ E+Q+GT       I +  +     L  +A  V  ++R F +   EL Y +QM       L+ HL A LR+
Sbjct:    2 IDLHPNIAPLAPLLGTWAGPGAGEYPTIQSFEYLEEITFGHV-GKPFLTYQQRTKARDDGRPLHAEVGYIRVPAPD-RVEWVLAHPTGITEIQEGTLTVGGDRITMDVKATTIGLTASAKNVTALARSFRITGDELTYTLQMGAVG-QPLQHHLAATLRR 158          
BLAST of CN184535 vs. ExPASy Swiss-Prot
Match: Y421_MYCSS (UPF0678 fatty acid-binding protein-like protein Mmcs_0421 OS=Mycobacterium sp. (strain MCS) GN=Mmcs_0421 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.954e-24
Identity = 61/158 (38.61%), Postives = 92/158 (58.23%), Query Frame = 2
Query:   14 VHPAIAPISYLLGTWRGQGSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKLGSGEPMHAESGYWRPNPDGSIEVVIAQSTGLVEVQKGTYNAEEKVIKLQ--SELVG---NASKVREVSRVFELVNGELRYVVQMATNHLTSLRPHLKAVLRKL 472
            VHP +  ++ LLGTW G+GSG YPTI  FDY EE+ F H+ GKP + Y Q+T     G P+HAE+GY R     ++E ++A  TG+ E+Q+G   A+   +++   S  +G   +A +V  V R  ++    L Y ++MA      L+ HL AVL ++
Sbjct:   18 VHPDLTALAPLLGTWSGKGSGEYPTIEPFDYTEEITFGHT-GKPFLTYVQRTRAADDGRPLHAETGYLRAPTPNNVEWILAHPTGITEIQEGPLTADGDTLRMDLISTDIGRSESAKEVMAVGRSMQISGDTLTYTLRMAAVG-RPLQHHLSAVLHRV 173          
BLAST of CN184535 vs. ExPASy Swiss-Prot
Match: Y408_MYCSJ (UPF0678 fatty acid-binding protein-like protein Mjls_0408 OS=Mycobacterium sp. (strain JLS) GN=Mjls_0408 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.954e-24
Identity = 61/158 (38.61%), Postives = 92/158 (58.23%), Query Frame = 2
Query:   14 VHPAIAPISYLLGTWRGQGSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKLGSGEPMHAESGYWRPNPDGSIEVVIAQSTGLVEVQKGTYNAEEKVIKLQ--SELVG---NASKVREVSRVFELVNGELRYVVQMATNHLTSLRPHLKAVLRKL 472
            VHP +  ++ LLGTW G+GSG YPTI  FDY EE+ F H+ GKP + Y Q+T     G P+HAE+GY R     ++E ++A  TG+ E+Q+G   A+   +++   S  +G   +A +V  V R  ++    L Y ++MA      L+ HL AVL ++
Sbjct:   18 VHPDLTALAPLLGTWSGKGSGEYPTIEPFDYTEEITFGHT-GKPFLTYVQRTRAADDGRPLHAETGYLRAPTPNNVEWILAHPTGITEIQEGPLTADGDTLRMDLISTDIGRSESAKEVMAVGRSMQISGDTLTYTLRMAAVG-RPLQHHLSAVLHRV 173          
BLAST of CN184535 vs. ExPASy Swiss-Prot
Match: Y2745_MYCTA (UPF0678 fatty acid-binding protein-like protein MRA_2745 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=MRA_2745 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.466e-23
Identity = 61/158 (38.61%), Postives = 92/158 (58.23%), Query Frame = 2
Query:   20 PAIAPISYLLGTWRGQGSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKLGSGEPMHAESGYWRPNPDGSIEVVIAQSTGLVEVQKGTYNAEEKVIKLQSE--------LVGNASKVREVSRVFELVNGELRYVVQMATNHLTSLRPHLKAVLRK 469
            PA+  +S LLG+W G+G+G YPTI  F+Y EE+ F H G KP + YTQ+T  +  G+P+H+E+GY R    G +E+V+A  +G+ E++ GTY+    VI+L+          L   A +V  + R + +   EL Y +QM       L+ HL AVL +
Sbjct:    7 PALQALSPLLGSWAGRGAGKYPTIRPFEYLEEVVFAHVG-KPFLTYTQQTRAVADGKPLHSETGYLRVCRPGCVELVLAHPSGITEIEVGTYSVTGDVIELELSTRADGSIGLAPTAKEVTALDRSYRIDGDELSYSLQMRAVG-QPLQDHLAAVLHR 162          
The following BLAST results are available for this feature:
BLAST of CN184535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
Y1926_ARATH3.021e-6175.32UPF0678 fatty acid-binding protein-like protein At... [more]
Y1995_MYCMM1.085e-2642.04UPF0678 fatty acid-binding protein-like protein MM... [more]
Y3360_MYCUA2.416e-2641.40UPF0678 fatty acid-binding protein-like protein MU... [more]
Y2833_MYCPA3.156e-2641.40UPF0678 fatty acid-binding protein-like protein MA... [more]
Y3611_MYCA11.566e-2540.76UPF0678 fatty acid-binding protein-like protein MA... [more]
Y449_MYCVP3.489e-2541.25UPF0678 fatty acid-binding protein-like protein Mv... [more]
Y6574_MYCS22.261e-2441.25UPF0678 fatty acid-binding protein-like protein MS... [more]
Y421_MYCSS2.954e-2438.61UPF0678 fatty acid-binding protein-like protein Mm... [more]
Y408_MYCSJ2.954e-2438.61UPF0678 fatty acid-binding protein-like protein Mj... [more]
Y2745_MYCTA1.466e-2338.61UPF0678 fatty acid-binding protein-like protein MR... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005K16_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005K16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184535 ID=CN184535; Name=CN184535; organism=Citrus sinensis; type=EST; length=606bp
AGGTGGAGTTCCAGTACACCCAGCAATAGCACCAATATCCTACTTGCTGG
GAACATGGAGAGGCCAAGGCTCGGGTGGGTACCCTACCATCAATGCCTTC
GATTATGGAGAAGAGCTCAATTTCACACATTCTGGTGGCAAGCCAGTGAT
AGCATATACCCAGAAGACTTGGAAACTGGGTTCAGGAGAGCCTATGCATG
CTGAGAGTGGCTACTGGAGGCCCAACCCTGATGGTTCCATTGAAGTTGTC
ATTGCTCAAAGCACTGGCCTTGTTGAAGTTCAGAAAGGAACATATAATGC
AGAAGAGAAAGTAATCAAGCTTCAGAGTGAACTTGTGGGAAATGCTTCCA
AGGTGCGAGAGGTAAGCAGAGTTTTTGAGCTGGTTAATGGTGAACTGCGT
TATGTGGTTCAAATGGCTACCAACCACCTGACTAGTCTTCGTCCACATCT
GAAAGCCGTGCTCAGGAAACTATGATTGTACAATCACTATGTTATTTCTC
TTGATATACTGGCAAAGCGCTCTATGAATGAGCATCTGTTGTAGTGGTAC
TGACTTGTTGGGGAAGGTTTTGGTTTCATAATAATAAAAAACTGCTCTCA
AAAAAA
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