CN184534

Overview
NameCN184534
Unique NameCN184534
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length532
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184534 vs. ExPASy Swiss-Prot
Match: Y1926_ARATH (UPF0678 fatty acid-binding protein-like protein At1g79260 OS=Arabidopsis thaliana GN=At1g79260 PE=1 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.440e-52
Identity = 98/124 (79.03%), Postives = 111/124 (89.52%), Query Frame = -2
Query:  160 ISYLLGTWRGQGSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKLGSGEPMHAESGYWRPNPDGSIEVVIAQSTGLVEVQKGTYNAEEKVIKLQSELVGNASKVREVSRVFELVNGELRYV 531
            +SYLLGTWRGQG G YPTI +F YGEE+ F+HSG KPVIAYTQKTWKL SG PMHAESGY+RP PDGSIEVVIAQSTGLVEVQKGTYN +E+ IKL+S+LVGNASKV+E+SR FELV+G+L YV
Sbjct:   23 LSYLLGTWRGQGEGEYPTIPSFRYGEEIRFSHSG-KPVIAYTQKTWKLESGAPMHAESGYFRPRPDGSIEVVIAQSTGLVEVQKGTYNVDEQSIKLKSDLVGNASKVKEISREFELVDGKLSYV 145          

HSP 2 Score: 23.483 bits (49), Expect = 4.440e-52
Identity = 12/22 (54.55%), Postives = 16/22 (72.73%), Query Frame = -3
Query:   93 VQMATNHLTSLRPHLKAVLRKL 158
            V+M+T     L+PHLKA+L KL
Sbjct:  146 VRMSTT-TNPLQPHLKAILDKL 166          
BLAST of CN184534 vs. ExPASy Swiss-Prot
Match: Y1995_MYCMM (UPF0678 fatty acid-binding protein-like protein MMAR_1995 OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=MMAR_1995 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.458e-23
Identity = 56/125 (44.80%), Postives = 78/125 (62.40%), Query Frame = -2
Query:  163 LLGTWRGQGSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKLGSGEPMHAESGYWRPNPDGSIEVVIAQSTGLVEVQKGTYNAEEKVIKLQS-----ELVGNASKVREVSRVFELVNGELRY 522
            LLGTW GQGSG YPTI  F+Y EE+ F+H G KP + Y QKT  +  G P+HAE+GY R    G +E+V+A  +G+ E++ GTY+A   VI+++       +   A +V  +SR F +V  EL Y
Sbjct:   15 LLGTWAGQGSGEYPTIEPFEYLEEVVFSHVG-KPFLVYAQKTRAVADGAPLHAETGYLRVPKPGQVELVLAHPSGITEIEVGTYSASGGVIEMEMVTTAIGMTPTAKEVTALSRSFRMVGDELSY 138          
BLAST of CN184534 vs. ExPASy Swiss-Prot
Match: Y3360_MYCUA (UPF0678 fatty acid-binding protein-like protein MUL_3360 OS=Mycobacterium ulcerans (strain Agy99) GN=MUL_3360 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.249e-23
Identity = 55/125 (44.00%), Postives = 78/125 (62.40%), Query Frame = -2
Query:  163 LLGTWRGQGSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKLGSGEPMHAESGYWRPNPDGSIEVVIAQSTGLVEVQKGTYNAEEKVIKLQS-----ELVGNASKVREVSRVFELVNGELRY 522
            LLGTW GQG+G YPTI  F+Y EE+ F+H G KP + Y QKT  +  G P+HAE+GY R    G +E+V+A  +G+ E++ GTY+A   VI+++       +   A +V  +SR F +V  EL Y
Sbjct:   15 LLGTWAGQGAGEYPTIEPFEYLEEVVFSHVG-KPFLVYAQKTRAVADGTPLHAETGYLRVPKPGQVELVLAHPSGITEIEVGTYSASGGVIEMEMVTTAIGMTPTAKEVTALSRSFRMVGDELSY 138          
BLAST of CN184534 vs. ExPASy Swiss-Prot
Match: Y2833_MYCPA (UPF0678 fatty acid-binding protein-like protein MAP_2833c OS=Mycobacterium paratuberculosis GN=MAP_2833c PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.365e-21
Identity = 53/125 (42.40%), Postives = 77/125 (61.60%), Query Frame = -2
Query:  163 LLGTWRGQGSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKLGSGEPMHAESGYWRPNPDGSIEVVIAQSTGLVEVQKGTYNAEEKVIKLQSE-----LVGNASKVREVSRVFELVNGELRY 522
            LLGTW G+GSG YPTI  FDY EE+ F+H G KP +AY QKT     G+P+HAE+GY R    G +E+V+A  +G+ E++ G+Y     +I+++       L  +A +V  ++R F +   EL Y
Sbjct:   15 LLGTWTGRGSGKYPTIQPFDYLEEVTFSHVG-KPFLAYAQKTRAAADGKPLHAETGYLRVPQPGRLELVLAHPSGITEIEVGSYAVTGGLIEMRMSTTSIGLTPSAKEVTALARWFRIDGDELSY 138          
BLAST of CN184534 vs. ExPASy Swiss-Prot
Match: Y3611_MYCA1 (UPF0678 fatty acid-binding protein-like protein MAV_3611 OS=Mycobacterium avium (strain 104) GN=MAV_3611 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 6.775e-21
Identity = 52/125 (41.60%), Postives = 75/125 (60.00%), Query Frame = -2
Query:  163 LLGTWRGQGSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKLGSGEPMHAESGYWRPNPDGSIEVVIAQSTGLVEVQKGTYNAEEKVIKLQSE-----LVGNASKVREVSRVFELVNGELRY 522
            LLGTW G+GSG YPTI  FDY EE+ F+H G KP +AY QKT     G+P+HAE+GY R    G +E+V+A  +G+ E++ G+Y     +I+++       L   A +V  + R F +   +L Y
Sbjct:   15 LLGTWTGRGSGKYPTIQPFDYLEEVTFSHVG-KPFLAYAQKTRAAADGKPLHAETGYLRVPQPGRLELVLAHPSGITEIEVGSYAVTGGLIEMRMSTTSIGLTPTAKEVTALGRWFRIDGDKLSY 138          
BLAST of CN184534 vs. ExPASy Swiss-Prot
Match: Y2745_MYCTA (UPF0678 fatty acid-binding protein-like protein MRA_2745 OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=MRA_2745 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.574e-20
Identity = 51/131 (38.93%), Postives = 78/131 (59.54%), Query Frame = -2
Query:  163 ISYLLGTWRGQGSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKLGSGEPMHAESGYWRPNPDGSIEVVIAQSTGLVEVQKGTYNAEEKVIKLQSE--------LVGNASKVREVSRVFELVNGELRY 531
            +S LLG+W G+G+G YPTI  F+Y EE+ F H G KP + YTQ+T  +  G+P+H+E+GY R    G +E+V+A  +G+ E++ GTY+    VI+L+          L   A +V  + R + +   EL Y
Sbjct:   12 LSPLLGSWAGRGAGKYPTIRPFEYLEEVVFAHVG-KPFLTYTQQTRAVADGKPLHSETGYLRVCRPGCVELVLAHPSGITEIEVGTYSVTGDVIELELSTRADGSIGLAPTAKEVTALDRSYRIDGDELSY 141          
BLAST of CN184534 vs. ExPASy Swiss-Prot
Match: Y2736_MYCBO (UPF0678 fatty acid-binding protein-like protein Mb2736c OS=Mycobacterium bovis GN=Mb2736c PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.574e-20
Identity = 51/131 (38.93%), Postives = 78/131 (59.54%), Query Frame = -2
Query:  163 ISYLLGTWRGQGSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKLGSGEPMHAESGYWRPNPDGSIEVVIAQSTGLVEVQKGTYNAEEKVIKLQSE--------LVGNASKVREVSRVFELVNGELRY 531
            +S LLG+W G+G+G YPTI  F+Y EE+ F H G KP + YTQ+T  +  G+P+H+E+GY R    G +E+V+A  +G+ E++ GTY+    VI+L+          L   A +V  + R + +   EL Y
Sbjct:   12 LSPLLGSWAGRGAGKYPTIRPFEYLEEVVFAHVG-KPFLTYTQQTRAVADGKPLHSETGYLRVCRPGCVELVLAHPSGITEIEVGTYSVTGDVIELELSTRADGSIGLAPTAKEVTALDRSYRIDGDELSY 141          
BLAST of CN184534 vs. ExPASy Swiss-Prot
Match: Y2730_MYCBP (UPF0678 fatty acid-binding protein-like protein BCG_2730c OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=BCG_2730c PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.574e-20
Identity = 51/131 (38.93%), Postives = 78/131 (59.54%), Query Frame = -2
Query:  163 ISYLLGTWRGQGSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKLGSGEPMHAESGYWRPNPDGSIEVVIAQSTGLVEVQKGTYNAEEKVIKLQSE--------LVGNASKVREVSRVFELVNGELRY 531
            +S LLG+W G+G+G YPTI  F+Y EE+ F H G KP + YTQ+T  +  G+P+H+E+GY R    G +E+V+A  +G+ E++ GTY+    VI+L+          L   A +V  + R + +   EL Y
Sbjct:   12 LSPLLGSWAGRGAGKYPTIRPFEYLEEVVFAHVG-KPFLTYTQQTRAVADGKPLHSETGYLRVCRPGCVELVLAHPSGITEIEVGTYSVTGDVIELELSTRADGSIGLAPTAKEVTALDRSYRIDGDELSY 141          
BLAST of CN184534 vs. ExPASy Swiss-Prot
Match: Y2717_MYCTU (UPF0678 fatty acid-binding protein-like protein Rv2717c/MT2790 OS=Mycobacterium tuberculosis GN=Rv2717c PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.574e-20
Identity = 51/131 (38.93%), Postives = 78/131 (59.54%), Query Frame = -2
Query:  163 ISYLLGTWRGQGSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKLGSGEPMHAESGYWRPNPDGSIEVVIAQSTGLVEVQKGTYNAEEKVIKLQSE--------LVGNASKVREVSRVFELVNGELRY 531
            +S LLG+W G+G+G YPTI  F+Y EE+ F H G KP + YTQ+T  +  G+P+H+E+GY R    G +E+V+A  +G+ E++ GTY+    VI+L+          L   A +V  + R + +   EL Y
Sbjct:   12 LSPLLGSWAGRGAGKYPTIRPFEYLEEVVFAHVG-KPFLTYTQQTRAVADGKPLHSETGYLRVCRPGCVELVLAHPSGITEIEVGTYSVTGDVIELELSTRADGSIGLAPTAKEVTALDRSYRIDGDELSY 141          
BLAST of CN184534 vs. ExPASy Swiss-Prot
Match: Y421_MYCSS (UPF0678 fatty acid-binding protein-like protein Mmcs_0421 OS=Mycobacterium sp. (strain MCS) GN=Mmcs_0421 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.391e-20
Identity = 47/112 (41.96%), Postives = 68/112 (60.71%), Query Frame = -2
Query:  193 LLGTWRGQGSGGYPTINAFDYGEELNFTHSGGKPVIAYTQKTWKLGSGEPMHAESGYWRPNPDGSIEVVIAQSTGLVEVQKGTYNAEEKVIKLQ--SELVGNASKVREVSRV 522
            LLGTW G+GSG YPTI  FDY EE+ F H+G KP + Y Q+T     G P+HAE+GY R     ++E ++A  TG+ E+Q+G   A+   +++   S  +G +   +EV  V
Sbjct:   28 LLGTWSGKGSGEYPTIEPFDYTEEITFGHTG-KPFLTYVQRTRAADDGRPLHAETGYLRAPTPNNVEWILAHPTGITEIQEGPLTADGDTLRMDLISTDIGRSESAKEVMAV 138          
The following BLAST results are available for this feature:
BLAST of CN184534 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
Y1926_ARATH4.440e-5279.03UPF0678 fatty acid-binding protein-like protein At... [more]
Y1995_MYCMM1.458e-2344.80UPF0678 fatty acid-binding protein-like protein MM... [more]
Y3360_MYCUA3.249e-2344.00UPF0678 fatty acid-binding protein-like protein MU... [more]
Y2833_MYCPA1.365e-2142.40UPF0678 fatty acid-binding protein-like protein MA... [more]
Y3611_MYCA16.775e-2141.60UPF0678 fatty acid-binding protein-like protein MA... [more]
Y2745_MYCTA2.574e-2038.93UPF0678 fatty acid-binding protein-like protein MR... [more]
Y2736_MYCBO2.574e-2038.93UPF0678 fatty acid-binding protein-like protein Mb... [more]
Y2730_MYCBP2.574e-2038.93UPF0678 fatty acid-binding protein-like protein BC... [more]
Y2717_MYCTU2.574e-2038.93UPF0678 fatty acid-binding protein-like protein Rv... [more]
Y421_MYCSS4.391e-2041.96UPF0678 fatty acid-binding protein-like protein Mm... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005K16_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005K16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184534 ID=CN184534; Name=CN184534; organism=Citrus sinensis; type=EST; length=532bp
TCCCCAACAAGTCAGTACCACTACAACAGATGCTCATTCATAGAGCGCTT
TGCCAGTATATCAAGAGAAATAACATAGTGATTGTACAATCATAGTTTCC
TGAGCACGGCTTTCAGATGTGGACGAAGACTAGTCAGGTGGTTGGTAGCC
ATTTGAACCGACATAACGCAGTTCACCATTAACCAGCTCAAAAACTCTGC
TTACCTCTCGCACCTTGGAAGCATTTCCCACAAGTTCACTCTGAAGCTTG
ATTACTTTCTCTTCTGCATTATATGTTCCTTTCTGAACTTCAACAAGGCC
AGTGCTTTGAGCAATGACAACTTCAATGGAACCATCAGGGTTGGGCCTCC
AGTAGCCACTCTCAGCATGCATAGGCTCTCCTGAACCCAGTTTCCAAGTC
TTCTGGGTATATGCTATCACTGGCTTGCCACCAGAATGTGTGAAATTGAG
CTCTTCTCCATAATCGAAGGCATTGATGGTAGGGTACCCACCCGAGCCTT
GGCCTCTCCATGTTCCCAGCAAGTAGGATATT
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