CN184507

Overview
NameCN184507
Unique NameCN184507
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length517
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184507 vs. ExPASy Swiss-Prot
Match: EF1G_PRUAV (Elongation factor 1-gamma OS=Prunus avium PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 3.475e-48
Identity = 91/108 (84.26%), Postives = 97/108 (89.81%), Query Frame = -3
Query:  192 KYNDENTVSFVTLNKVSGFLQRMDLAPKYAFGKMLIIGNEPPLKVKGLSLFRGPEIPKFVMDECYDMELYDWKKADISAEEQKERVNQMIEDPEPFEGEALLDAKCFK 515
            KYNDENTVSFVTLNKV GFLQRMDLA KYAFGKML+IG+EPP KVKGL LFRG EIP FVM+ECYDMELY+W K D+S E QKERVNQ+IED EPFEGEALLDAKCFK
Sbjct:  315 KYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSEPPFKVKGLWLFRGQEIPPFVMEECYDMELYNWTKVDLSDENQKERVNQVIEDQEPFEGEALLDAKCFK 422          
BLAST of CN184507 vs. ExPASy Swiss-Prot
Match: EF1G1_ORYSJ (Elongation factor 1-gamma 1 OS=Oryza sativa subsp. japonica GN=Os02g0220600 PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.321e-47
Identity = 91/108 (84.26%), Postives = 96/108 (88.89%), Query Frame = -3
Query:  192 KYNDENTVSFVTLNKVSGFLQRMDLAPKYAFGKMLIIGNEPPLKVKGLSLFRGPEIPKFVMDECYDMELYDWKKADISAEEQKERVNQMIEDPEPFEGEALLDAKCFK 515
            KYNDENTVSFVT+NKV GFLQRMDL  KYAFGKML+IG+EPP KVKGL LFRGPEIPKFVMDE YDMELY+W K DIS E QKERV+ MIED EPFEGEALLDAKCFK
Sbjct:  311 KYNDENTVSFVTMNKVGGFLQRMDLCRKYAFGKMLVIGSEPPFKVKGLWLFRGPEIPKFVMDEVYDMELYEWTKVDISDEAQKERVSAMIEDLEPFEGEALLDAKCFK 418          
BLAST of CN184507 vs. ExPASy Swiss-Prot
Match: EF1G2_ORYSJ (Elongation factor 1-gamma 2 OS=Oryza sativa subsp. japonica GN=Os02g0220500 PE=2 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 2.942e-47
Identity = 90/108 (83.33%), Postives = 96/108 (88.89%), Query Frame = -3
Query:  192 KYNDENTVSFVTLNKVSGFLQRMDLAPKYAFGKMLIIGNEPPLKVKGLSLFRGPEIPKFVMDECYDMELYDWKKADISAEEQKERVNQMIEDPEPFEGEALLDAKCFK 515
            KYNDENTVSFVT+NKV GFLQRMDL  KYAFGKML+IG+EPP KVKGL LFRGPEIPKFVMDE YDMELY+W K DIS E QKERV+ MIED EPFEGE+LLDAKCFK
Sbjct:  311 KYNDENTVSFVTMNKVGGFLQRMDLCRKYAFGKMLVIGSEPPFKVKGLWLFRGPEIPKFVMDEVYDMELYEWTKVDISDEAQKERVSAMIEDLEPFEGESLLDAKCFK 418          
BLAST of CN184507 vs. ExPASy Swiss-Prot
Match: EF1G2_ARATH (Probable elongation factor 1-gamma 2 OS=Arabidopsis thaliana GN=At1g57720 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.460e-46
Identity = 90/108 (83.33%), Postives = 95/108 (87.96%), Query Frame = -3
Query:  192 KYNDENTVSFVTLNKVSGFLQRMDLAPKYAFGKMLIIGNEPPLKVKGLSLFRGPEIPKFVMDECYDMELYDWKKADISAEEQKERVNQMIEDPEPFEGEALLDAKCFK 515
            KYNDEN VSFVTLNKV GFLQRMDLA KY+FGKMLI G+E P KVKGL LFRGPEIPKF+MDE YDMELY+W K DIS E QKERV+QMIED EPFEGEALLDAKCFK
Sbjct:  306 KYNDENMVSFVTLNKVGGFLQRMDLARKYSFGKMLICGSEGPFKVKGLWLFRGPEIPKFIMDEVYDMELYEWTKVDISDEAQKERVSQMIEDAEPFEGEALLDAKCFK 413          
BLAST of CN184507 vs. ExPASy Swiss-Prot
Match: EF1G1_ARATH (Probable elongation factor 1-gamma 1 OS=Arabidopsis thaliana GN=At1g09640 PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 1.460e-46
Identity = 90/108 (83.33%), Postives = 95/108 (87.96%), Query Frame = -3
Query:  192 KYNDENTVSFVTLNKVSGFLQRMDLAPKYAFGKMLIIGNEPPLKVKGLSLFRGPEIPKFVMDECYDMELYDWKKADISAEEQKERVNQMIEDPEPFEGEALLDAKCFK 515
            KYNDEN VSFVTLNKV GFLQRMDLA KY+FGKMLI G+E P KVKGL LFRGPEIPKF+MDE YDMELY+W K DIS E QKERV+QMIED EPFEGEALLDAKCFK
Sbjct:  307 KYNDENMVSFVTLNKVGGFLQRMDLARKYSFGKMLICGSEGPFKVKGLWLFRGPEIPKFIMDEVYDMELYEWTKVDISDEAQKERVSQMIEDAEPFEGEALLDAKCFK 414          
BLAST of CN184507 vs. ExPASy Swiss-Prot
Match: EF1G3_ORYSJ (Elongation factor 1-gamma 3 OS=Oryza sativa subsp. japonica GN=Os06g0571400 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.614e-45
Identity = 87/108 (80.56%), Postives = 93/108 (86.11%), Query Frame = -3
Query:  192 KYNDENTVSFVTLNKVSGFLQRMDLAPKYAFGKMLIIGNEPPLKVKGLSLFRGPEIPKFVMDECYDMELYDWKKADISAEEQKERVNQMIEDPEPFEGEALLDAKCFK 515
            KYNDENTVSFVT+NKV GFLQRMDL  KYAFGKML+IG+ PP KVKGL LFRG +IPKFVMDE YDMELY+W K D+S E QKERVN MIED EPFEGE LLDAKCFK
Sbjct:  309 KYNDENTVSFVTMNKVGGFLQRMDLCRKYAFGKMLVIGSTPPFKVKGLWLFRGQDIPKFVMDEVYDMELYEWTKVDLSDEAQKERVNAMIEDQEPFEGEDLLDAKCFK 416          
BLAST of CN184507 vs. ExPASy Swiss-Prot
Match: EF1G_TRYCR (Elongation factor 1-gamma OS=Trypanosoma cruzi PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.630e-13
Identity = 41/109 (37.61%), Postives = 66/109 (60.55%), Query Frame = -3
Query:  192 KYNDENTVSFVTLNKVSGFLQRMDLAPKYAFGKMLIIGNEPPLKVKGLSLFRGPEIPKFVMDECYDMELYDWKK-ADISAEEQKERVNQMIEDPEPFEGEALLDAKCFK 515
            KYN++N + F+T N + G+ QRM+   KYAFG  LIIG E    +  L +FRG  +P  ++++  D EL+DW++ AD++A  Q+ER+   +    P     +L+ + FK
Sbjct:  306 KYNEDNKMQFMTANLIRGWFQRMEHVRKYAFGVALIIGEERRHDIVALWVFRGRGMPA-IVEDVEDTELFDWEEVADVAA--QRERITDYLSWEGPTIPRPVLEGRVFK 411          
The following BLAST results are available for this feature:
BLAST of CN184507 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
EF1G_PRUAV3.475e-4884.26Elongation factor 1-gamma OS=Prunus avium PE=2 SV=... [more]
EF1G1_ORYSJ1.321e-4784.26Elongation factor 1-gamma 1 OS=Oryza sativa subsp.... [more]
EF1G2_ORYSJ2.942e-4783.33Elongation factor 1-gamma 2 OS=Oryza sativa subsp.... [more]
EF1G2_ARATH1.460e-4683.33Probable elongation factor 1-gamma 2 OS=Arabidopsi... [more]
EF1G1_ARATH1.460e-4683.33Probable elongation factor 1-gamma 1 OS=Arabidopsi... [more]
EF1G3_ORYSJ1.614e-4580.56Elongation factor 1-gamma 3 OS=Oryza sativa subsp.... [more]
EF1G_TRYCR3.630e-1337.61Elongation factor 1-gamma OS=Trypanosoma cruzi PE=... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0005K02_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005K02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184507 ID=CN184507; Name=CN184507; organism=Citrus sinensis; type=EST; length=517bp
GAGGGAACCATTGAAACTTGTATTAAAAAGATGTCCAAATCATCCTCAAA
ATTGCGACAAAGTTATAAGTTAATACTATAACACCAAATACTAGACTTCG
ATCTTTCTGAATTCGAAACACAAACAAACTCTACCAATAACCAAAGACAA
ACATGAACATCTTAGAACTAGAAAAAAGATTAAGCTCATCGCTTGAAGCA
CTTAGCATCCAAAAGAGCTTCACCCTCAAAAGGCTCGGGATCCTCGATCA
TCTGGTTCACACGTTCCTTTTGCTCTTCGGCTGAGATGTCAGCCTTCTTC
CAGTCATACAATTCCATGTCATAGCACTCATCCATGACGAATTTAGGAAT
TTCTGGGCCACGGAAGAGCGACAACCCCTTGACTTTGAGTGGAGGCTCGT
TGCCGATAATTAACATCTTTCCAAACGCATACTTGGGAGCCAGATCCATC
CTCTGAAGAAACCCACTGACCTTGTTCAAGGTCACGAATGACACAGTATT
CTCGTCATTGTATTTGT
back to top