CN184498

Overview
NameCN184498
Unique NameCN184498
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length347
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9805 contig Csv1_Contig9805:268..614. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184498 vs. ExPASy Swiss-Prot
Match: PLT2_ARATH (Putative polyol transporter 2 OS=Arabidopsis thaliana GN=PLT2 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 7.563e-40
Identity = 83/114 (72.81%), Postives = 93/114 (81.58%), Query Frame = -1
Query:    3 AILASMTSILLGYDIGVMSGAALYIKDDFKVSDTQIEILIGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXATNYAFLMGGRFVAGVGVGYALMIAPVYTAD 344
            AILASMTSI+LGYDIGVMSGAA++IKDD K+SD Q+EIL+GILNIYSLIGS AAGRTSDWIGRRYTIV               ATNY F+M GRFVAG+GVGYA+MIAPVYT +
Sbjct:   30 AILASMTSIILGYDIGVMSGAAIFIKDDLKLSDVQLEILMGILNIYSLIGSGAAGRTSDWIGRRYTIVLAGFFFFCGALLMGFATNYPFIMVGRFVAGIGVGYAMMIAPVYTTE 143          
BLAST of CN184498 vs. ExPASy Swiss-Prot
Match: PLT1_ARATH (Putative polyol transporter 1 OS=Arabidopsis thaliana GN=PLT1 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 1.290e-39
Identity = 81/114 (71.05%), Postives = 94/114 (82.46%), Query Frame = -1
Query:    3 AILASMTSILLGYDIGVMSGAALYIKDDFKVSDTQIEILIGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXATNYAFLMGGRFVAGVGVGYALMIAPVYTAD 344
            AILASMTSI+LGYDIGVMSGA+++IKDD K+SD Q+EIL+GILNIYSL+GS AAGRTSDW+GRRYTIV               ATNY F+M GRFVAG+GVGYA+MIAPVYTA+
Sbjct:   30 AILASMTSIILGYDIGVMSGASIFIKDDLKLSDVQLEILMGILNIYSLVGSGAAGRTSDWLGRRYTIVLAGAFFFCGALLMGFATNYPFIMVGRFVAGIGVGYAMMIAPVYTAE 143          
BLAST of CN184498 vs. ExPASy Swiss-Prot
Match: PLT5_ARATH (Polyol transporter 5 OS=Arabidopsis thaliana GN=PLT5 PE=1 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 2.433e-38
Identity = 82/114 (71.93%), Postives = 89/114 (78.07%), Query Frame = -1
Query:    3 AILASMTSILLGYDIGVMSGAALYIKDDFKVSDTQIEILIGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXATNYAFLMGGRFVAGVGVGYALMIAPVYTAD 344
            AILASMTSILLGYDIGVMSGA +YIK D K++D QI IL G LNIYSLIGS AAGRTSDWIGRRYTIV               + NYAFLM GRF+AG+GVGYALMIAPVYTA+
Sbjct:   40 AILASMTSILLGYDIGVMSGAMIYIKRDLKINDLQIGILAGSLNIYSLIGSCAAGRTSDWIGRRYTIVLAGAIFFAGAILMGLSPNYAFLMFGRFIAGIGVGYALMIAPVYTAE 153          
BLAST of CN184498 vs. ExPASy Swiss-Prot
Match: PLT3_ARATH (Probable polyol transporter 3 OS=Arabidopsis thaliana GN=PLT3 PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 1.430e-30
Identity = 66/114 (57.89%), Postives = 83/114 (72.81%), Query Frame = -1
Query:    3 AILASMTSILLGYDIGVMSGAALYIKDDFKVSDTQIEILIGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXATNYAFLMGGRFVAGVGVGYALMIAPVYTAD 344
            AI+AS+ SI+ GYD GVMSGA ++I+DD K++DTQIE+L GILN+ +L+GSL AG+TSD IGRRYTI                  NY  LM GR +AGVGVG+ALMIAPVY+A+
Sbjct:   26 AIVASIISIIFGYDTGVMSGAQIFIRDDLKINDTQIEVLAGILNLCALVGSLTAGKTSDVIGRRYTIALSAVIFLVGSVLMGYGPNYPVLMVGRCIAGVGVGFALMIAPVYSAE 139          
BLAST of CN184498 vs. ExPASy Swiss-Prot
Match: PLT6_ARATH (Probable polyol transporter 6 OS=Arabidopsis thaliana GN=PLT6 PE=2 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 6.006e-29
Identity = 63/114 (55.26%), Postives = 81/114 (71.05%), Query Frame = -1
Query:    3 AILASMTSILLGYDIGVMSGAALYIKDDFKVSDTQIEILIGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXATNYAFLMGGRFVAGVGVGYALMIAPVYTAD 344
            AI+AS+ SI+ GYD GVMSGA ++I++D K +D QIE+L GILN+ +L+GSL AGRTSD IGRRYTIV                 NY  L+ GR  AG+GVG+ALM+APVY+A+
Sbjct:   21 AIVASIVSIIFGYDTGVMSGAMVFIEEDLKTNDVQIEVLTGILNLCALVGSLLAGRTSDIIGRRYTIVLASILFMLGSILMGWGPNYPVLLSGRCTAGLGVGFALMVAPVYSAE 134          
BLAST of CN184498 vs. ExPASy Swiss-Prot
Match: PLT4_ARATH (Probable polyol transporter 4 OS=Arabidopsis thaliana GN=PLT4 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 1.999e-24
Identity = 56/114 (49.12%), Postives = 77/114 (67.54%), Query Frame = -1
Query:    3 AILASMTSILLGYDIGVMSGAALYIKDDFKVSDTQIEILIGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXATNYAFLMGGRFVAGVGVGYALMIAPVYTAD 344
            A  AS+ ++LLGYD+GVMSGA L+I+ D K+++ Q E+LIG L+I SL GSLA GRTSD IGR++T+                A ++  LM GR +AG+G+G  +MIAPVY A+
Sbjct:   59 AFFASLNNVLLGYDVGVMSGAVLFIQQDLKITEVQTEVLIGSLSIISLFGSLAGGRTSDSIGRKWTMALAALVFQTGAAVMAVAPSFEVLMIGRTLAGIGIGLGVMIAPVYIAE 172          
BLAST of CN184498 vs. ExPASy Swiss-Prot
Match: INT2_ARATH (Probable inositol transporter 2 OS=Arabidopsis thaliana GN=INT2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.108e-12
Identity = 41/117 (35.04%), Postives = 62/117 (52.99%), Query Frame = -1
Query:    3 AILASMTSILLGYDIGVMSGAALYIKDDFKVSDTQI---EILIGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXATNYAFLMGGRFVAGVGVGYALMIAPVYTAD 344
            A  A +  +L GYD GV+SGA LYI+DDFK  D      E+++ +    +++G+   G  +D +GRR  I+               A N + L+ GR   G+GVG A M AP+Y ++
Sbjct:   32 AFSAGIGGLLFGYDTGVISGALLYIRDDFKSVDRNTWLQEMIVSMAVAGAIVGAAIGGWANDKLGRRSAILMADFLFLLGAIIMAAAPNPSLLVVGRVFVGLGVGMASMTAPLYISE 148          
BLAST of CN184498 vs. ExPASy Swiss-Prot
Match: INT1_ARATH (Probable inositol transporter 1 OS=Arabidopsis thaliana GN=INT1 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.108e-12
Identity = 41/116 (35.34%), Postives = 63/116 (54.31%), Query Frame = -1
Query:    3 ILASMTSILLGYDIGVMSGAALYIKDDFKV---SDTQIEILIGILNIYSLIGSLAAGRTSDWIGRRYTIVXXXXXXXXXXXXXXXATNYAFLMGGRFVAGVGVGYALMIAPVYTAD 341
            + A +  +L GYD GV+SGA LYIKDDF+V   S    E ++ +  + ++IG+ A G  +D+ GR+   +               A +   L+ GR + G+GVG A + APVY A+
Sbjct:   36 VTAGIGGLLFGYDTGVISGALLYIKDDFEVVKQSSFLQETIVSMALVGAMIGAAAGGWINDYYGRKKATLFADVVFAAGAIVMAAAPDPYVLISGRLLVGLGVGVASVTAPVYIAE 151          
The following BLAST results are available for this feature:
BLAST of CN184498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PLT2_ARATH7.563e-4072.81Putative polyol transporter 2 OS=Arabidopsis thali... [more]
PLT1_ARATH1.290e-3971.05Putative polyol transporter 1 OS=Arabidopsis thali... [more]
PLT5_ARATH2.433e-3871.93Polyol transporter 5 OS=Arabidopsis thaliana GN=PL... [more]
PLT3_ARATH1.430e-3057.89Probable polyol transporter 3 OS=Arabidopsis thali... [more]
PLT6_ARATH6.006e-2955.26Probable polyol transporter 6 OS=Arabidopsis thali... [more]
PLT4_ARATH1.999e-2449.12Probable polyol transporter 4 OS=Arabidopsis thali... [more]
INT2_ARATH5.108e-1235.04Probable inositol transporter 2 OS=Arabidopsis tha... [more]
INT1_ARATH5.108e-1235.34Probable inositol transporter 1 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0005J22_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005J22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184498 ID=CN184498; Name=CN184498; organism=Citrus sinensis; type=EST; length=347bp
GAGTCAGCTGTGTAAACGGGAGCGATCATGAGAGCGTATCCGACGCCGAC
ACCGGCGACGAAGCGACCCCCCATGAGGAAAGCATAGTTTGTGGCGAACC
CCATGAGCAGCGCTCCGGCGAAGAAGATGGCCCCGGCTAACACGATAGTG
TACCGGCGGCCAATCCAGTCGGAGGTTCTGCCGGCGGCCAGTGAGCCGAT
GAGTGAGTAAATATTCAAGATTCCAATTAAGATCTCGATTTGTGTGTCAC
TGACTTTAAAGTCGTCTTTGATGTAGAGTGCAGCTCCACTCATTACTCCA
ATGTCATAACCTAGTAAGATTGAAGTCATGGAAGCCAAAATGGCCCT
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