CN184491

Overview
NameCN184491
Unique NameCN184491
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length362
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184491 vs. ExPASy Swiss-Prot
Match: PROSC_BOVIN (Proline synthetase co-transcribed bacterial homolog protein OS=Bos taurus GN=PROSC PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.405e-17
Identity = 48/92 (52.17%), Postives = 60/92 (65.22%), Query Frame = -1
Query:   90 LVKHVSQNCPNLEFCGLMTI--WDARFTHRPRRTSRH*QNAEVRYARALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAREYPKK 359
            LV+H++  CP+LEF GLMTI  +    +  P    +   +      R LG P EQ +LSMGMS DF+ AIE+GSTNVRIGSTIFG R+Y KK
Sbjct:  164 LVEHINAKCPSLEFVGLMTIGSFGHDLSQGPNPDFQVLLSLREELCRKLGAPPEQVELSMGMSVDFQHAIEVGSTNVRIGSTIFGERDYSKK 255          
BLAST of CN184491 vs. ExPASy Swiss-Prot
Match: PROSC_HUMAN (Proline synthetase co-transcribed bacterial homolog protein OS=Homo sapiens GN=PROSC PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.102e-17
Identity = 45/92 (48.91%), Postives = 60/92 (65.22%), Query Frame = -1
Query:   90 LVKHVSQNCPNLEFCGLMTI--WDARFTHRPRRTSRH*QNAEVRYARALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAREYPKK 359
            +V+H++  CPNLEF GLMTI  +    +  P    +   +      + L IP +Q +LSMGMS DF+ A+E+GSTNVRIGSTIFG R+Y KK
Sbjct:  164 IVEHINAKCPNLEFVGLMTIGSFGHDLSQGPNPDFQLLLSLREELCKKLNIPADQVELSMGMSADFQHAVEVGSTNVRIGSTIFGERDYSKK 255          
BLAST of CN184491 vs. ExPASy Swiss-Prot
Match: PROSC_MOUSE (Proline synthetase co-transcribed bacterial homolog protein OS=Mus musculus GN=Prosc PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.358e-17
Identity = 47/92 (51.09%), Postives = 59/92 (64.13%), Query Frame = -1
Query:   90 LVKHVSQNCPNLEFCGLMTI--WDARFTHRPRRTSRH*QNAEVRYARALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAREYPKK 359
            +V+H+  +CP+LEF GLMTI  +    +  P    +            LGIP EQ +LSMGMS DF+ AIE+GSTNVRIGSTIFG R+Y KK
Sbjct:  164 VVEHIKASCPSLEFVGLMTIGSFGHDLSQGPNPDFQRLLTLRRELCEKLGIPVEQVELSMGMSMDFQHAIEVGSTNVRIGSTIFGERDYSKK 255          
BLAST of CN184491 vs. ExPASy Swiss-Prot
Match: PROSC_PONAB (Proline synthetase co-transcribed bacterial homolog protein OS=Pongo abelii GN=PROSC PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.473e-16
Identity = 45/92 (48.91%), Postives = 59/92 (64.13%), Query Frame = -1
Query:   90 LVKHVSQNCPNLEFCGLMTI--WDARFTHRPRRTSRH*QNAEVRYARALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAREYPKK 359
            +V+H++  CPNLEF GLMTI  +    +  P    +   +      + L IP +Q +LSMGMS DF+ AIE+GSTNVRIGS IFG R+Y KK
Sbjct:  164 IVEHINAKCPNLEFVGLMTIGSFGHDLSQGPNPDFQLLLSLREELCKKLNIPADQVELSMGMSVDFQHAIEVGSTNVRIGSMIFGERDYSKK 255          
BLAST of CN184491 vs. ExPASy Swiss-Prot
Match: PROSC_DICDI (Proline synthetase co-transcribed bacterial homolog protein OS=Dictyostelium discoideum GN=prosc PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 1.972e-11
Identity = 43/94 (45.74%), Postives = 57/94 (60.64%), Query Frame = -1
Query:   90 ELVKHVSQ--NCPN-LEFCGLMTIWDARFTHRPRRTSRH*QNAEVRYARALGIPEEQCDLSMGMSGDFELAIEMGSTNVRIGSTIFGAREYPKK 362
            +LVKH  +  NC N L F GLMTI +   T   +   +   + +   ++ L IP +  +LSMGMS DFE AIE GST+VR+GS IFG R+Y  K
Sbjct:  162 DLVKHCLEDNNCKNSLNFLGLMTIGNPNATP-DQPDFKCLVDCKNNISKQLNIPLDSIELSMGMSHDFEPAIEFGSTSVRVGSAIFGERDYSNK 254          
The following BLAST results are available for this feature:
BLAST of CN184491 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PROSC_BOVIN2.405e-1752.17Proline synthetase co-transcribed bacterial homolo... [more]
PROSC_HUMAN4.102e-1748.91Proline synthetase co-transcribed bacterial homolo... [more]
PROSC_MOUSE5.358e-1751.09Proline synthetase co-transcribed bacterial homolo... [more]
PROSC_PONAB3.473e-1648.91Proline synthetase co-transcribed bacterial homolo... [more]
PROSC_DICDI1.972e-1145.74Proline synthetase co-transcribed bacterial homolo... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0005J17_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005J17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184491 ID=CN184491; Name=CN184491; organism=Citrus sinensis; type=EST; length=362bp
TAATCTACTATACTCTAGTTTCAGTACATTAAGATAAACACATAACAATA
GCCAACGTTTTCAGAACAGGTGAAAAAAAAAGTTTAGTTCTTCTTCGGAT
ATTCCCTTGCACCAAATATTGTGGATCCAATCCTGACATTGGTGCTCCCC
ATTTCAATAGCAAGCTCGAAGTCACCAGACATTCCCATAGACAGATCACA
TTGCTCTTCTGGTATTCCAAGAGCCCTTGCATACCTCACTTCTGCATTTT
GCTAATGTCTTGAAGTTCTCCGGGGTCGATGTGTAAATCTGGCATCCCAA
ATTGTCATTAGGCCACAAAACTCAAGATTCGGACAGTTTTGACTAACATG
TTTCACAAGTTC
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