CN184489

Overview
NameCN184489
Unique NameCN184489
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length538
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN184489 vs. ExPASy Swiss-Prot
Match: IF4G1_ARATH (Eukaryotic translation initiation factor 4G OS=Arabidopsis thaliana GN=EIF4G PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 5.412e-26
Identity = 64/109 (58.72%), Postives = 73/109 (66.97%), Query Frame = -2 
Query:  211 GFESVLTTLEDAVNDAPRAAEFLGRIFAKVVEENVXXXXXXXXXXXXXXXXXXXLQEIGLAGDVLGSTLEIIKSDKGESVLHEVRMSSNLRLEDFRPPEPNRSRILEKF 537
            GFESVL TLEDAVNDAP+AAEFLGRIF K V E V                   L E GL GDVLGS LE+IK++ GE  L E+R SS LR+E+F+P  PNRS+ILEKF
Sbjct: 1616 GFESVLKTLEDAVNDAPKAAEFLGRIFGKSVTEKVVTLTEIGRLIQEGGEEPGSLIEFGLGGDVLGSVLEMIKTEAGEETLVEIRRSSGLRIENFKPHAPNRSKILEKF 1724
The following BLAST results are available for this feature:
BLAST of CN184489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
IF4G1_ARATH5.412e-2658.72Eukaryotic translation initiation factor 4G OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0005J15_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005J15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184489 ID=CN184489; Name=CN184489; organism=Citrus sinensis; type=EST; length=538bp
TTTCCATAATTGCAGTTGCAGTAAAAATCTGCTGATGAAATAATATTAGT
AGAAGGAAAACCCCATACTGCCATGTAGCCGCCCCCATCCCACCCATCAA
GAAAAATATATTTTAGCATAATAATAATAATAATAACGAGTACCCTAAAG
GCACTAGGGATCAATTTCTTCTATCGAGATACAAATGAGCATCACCTATC
CCCTCTAAATAAATTTTTCTAGTATTCTTGATCTGTTAGGCTCTGGAGGC
CTGAAATCCTCCAATCTCAAATTCGAGCTCATTCGAACCTCATGTAACAC
ACTTTCTCCTTTATCTGATTTAATGATCTCTAATGTGCTTCCAAGAACAT
CACCCGCAAGCCCAATTTCCTGAAGACGCCCAGGTTCCTCTCCACCTTCA
CGTAACAACCTCCCAATCTCCCTCAAGGGAATCACATTCTCTTCGACAAC
TTTGGCAAATATACGGCCAAGAAATTCTGCTGCTCTTGGAGCATCATTTA
CTGCATCCTCCAAAGTAGTGAGAACAGATTCAAACCCT
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