EY666415

Overview
NameEY666415
Unique NameEY666415
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length866
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY666415 vs. ExPASy Swiss-Prot
Match: Y1686_ARATH (Uncharacterized membrane protein At1g16860 OS=Arabidopsis thaliana GN=At1g16860 PE=1 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 3.307e-69
Identity = 142/219 (64.84%), Postives = 159/219 (72.60%), Query Frame = 2 
Query:   89 MGSRYPSHQLSNGLFVSGRPEQPKEKAPTMSSVAMPYTGGDIKKSGELGKMFDIPMDSAKSRKSGPITGAPSRTGSFAGAATHSGSIPNAAGRAGYNVXXXXXXXXXXXXXMKKTNSGPLNKHGEPIKKSSGPQSGGATRQNSGPIPPSLPATGLITSGPISSGPLNSSGAPRKLSG---FFGFLQEQSK*TVPPWPKPSLLLTITREKNYSLQKKLPK 736
            MGSRYPSHQLSNGLFVSGRPEQPKE+APTMS+VAMPYTGGDIK+SGELGKMFDIP D  KSRKSGPI GAPSR+GSFAG A      P A GR   ++             MKKTNSGPL+KHGEP+KKSSGPQSGG TRQNSG I P LPATGLITSGPI+SGPLNSSGAPRK+SG     G ++      +P       + T+  E ++S  K  PK
Sbjct:    1 MGSRYPSHQLSNGLFVSGRPEQPKERAPTMSAVAMPYTGGDIKRSGELGKMFDIPADGTKSRKSGPIPGAPSRSGSFAGTAQSGPGAPMATGRMSGSL------ASAGSVSMKKTNSGPLSKHGEPLKKSSGPQSGGVTRQNSGSI-PILPATGLITSGPITSGPLNSSGAPRKVSGPLDSSGLMKSH----MPTVVHNQAVTTLGPEDDFSCLKSFPK 208
The following BLAST results are available for this feature:
BLAST of EY666415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1686_ARATH3.307e-6964.84Uncharacterized membrane protein At1g16860 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-102-017-F04-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666415 ID=EY666415; Name=EY666415; organism=Citrus sinensis; type=EST; length=866bp
TGATTTTCAGCAAGGAAAACTTCTTCTTCAGCTTCCTCTTGGTGGTCTTC
ATTGTCTTCTCTCTTTTGGGTTCTGCTGAAGAGGCTTGATGGGTTCCAGG
TACCCATCTCATCAGCTCAGCAATGGCCTTTTTGTGTCAGGTCGGCCTGA
GCAGCCTAAAGAAAAGGCTCCAACAATGAGCTCAGTAGCCATGCCTTATA
CAGGTGGTGACATCAAGAAGTCGGGAGAACTGGGTAAAATGTTTGATATC
CCTATGGATAGTGCTAAGTCTAGGAAATCTGGCCCCATAACCGGTGCTCC
TTCAAGAACTGGATCTTTTGCAGGGGCTGCAACACATTCAGGATCAATTC
CTAATGCTGCAGGTCGTGCTGGCTATAATGTATCGGGTCCTATATCTTCT
GGAGGGCCTGGTTCAGGCTCAATGAAGAAGACAAATTCTGGACCATTAAA
TAAACATGGGGAACCGATTAAGAAGTCATCTGGCCCTCAATCTGGTGGAG
CAACTCGACAAAACTCGGGCCCTATTCCACCAAGTCTCCCAGCAACCGGT
CTCATCACATCTGGTCCAATTTCTTCGGGCCCCCTAAATTCATCTGGGGC
TCCTCGAAAACTATCTGGGTTCTTTGGATTTCTTCAGGAACAATCAAAAT
GAACAGTTCCTCCATGGCCAAAACCAAGCTTGTTACTAACCATTACTCGG
GAAAAGAACTACTCCCTTCAGAAAAAACTTCCCAAAACCAGGGTAATTGG
TGGGGGATTTCTAATATTTGGGAAGGGGATTTTTTGGCTGGGGGGTTTTA
TTTTTTTGGGGGCGGCCCCCAAACCCCCTTCCCCCCCCATTGGTGGCCCG
GGGACTCTTTTTTCCC
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