CN184481

Overview
NameCN184481
Unique NameCN184481
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2024 contig Csv1_Contig2024:6..677. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184481 vs. ExPASy Swiss-Prot
Match: TI10A_ARATH (Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10A PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.315e-26
Identity = 72/148 (48.65%), Postives = 94/148 (63.51%), Query Frame = 2
Query:  230 EKSSFSQTCSLLSQYLKEGGSFGDLSLGISSNIEANGVPEIPRRPAATTMNLFPVSDNSGQDVSVRNMVAPRNWESMNLFPQQAGFA------PKNDTPNMIDSSLN-KPAPQTAQMTIFYGGQVIAFNDFPADKANEIMQLASNGSS 652
            +K SFSQTCS LSQYLKE GSFGDLSLG++   + NG     R+P  TTM+LFP  + S  D  V+++      +  NLFP+Q  F+      PK D   M  ++ + KP  QTA +TIFY GQVI FNDF A+KA E++ LAS G++
Sbjct:   19 KKPSFSQTCSRLSQYLKENGSFGDLSLGMACKPDVNGTLGNSRQP-TTTMSLFP-CEASNMDSMVQDV------KPTNLFPRQPSFSSSSSSLPKEDVLKMTQTTRSVKPESQTAPLTIFYAGQVIVFNDFSAEKAKEVINLASKGTA 158          
BLAST of CN184481 vs. ExPASy Swiss-Prot
Match: TI10B_ARATH (Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10B PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.273e-21
Identity = 62/147 (42.18%), Postives = 87/147 (59.18%), Query Frame = 2
Query:  233 KSSFSQTCSLLSQYLKEGGSFGDLSLGISSNIEANGVPEIPRRPAATTMNLFPVSDNSGQDVSVRNMVAPRNWESMNLFPQQAGFAPKNDTPNMIDSSLNK-------PAPQTAQMTIFYGGQVIAFNDFPADKANEIMQLASNGSS 652
            K SFSQTC+ LS+YLKE GSFGDLSLG++   + NG    P     T MNLFP  + SG D S        + +   +FP+Q+ F+  + +    D  + K       P  Q+A +TIFYGG+V+ F+DF A+KA E++ LA+ GS+
Sbjct:   15 KPSFSQTCTRLSRYLKEKGSFGDLSLGMTCKPDVNGGSRQP-----TMMNLFPC-EASGMDSSA----GQEDIKPKTMFPRQSSFSSSSSSGTKEDVQMIKETTKSVKPESQSAPLTIFYGGRVMVFDDFSAEKAKEVIDLANKGSA 151          
BLAST of CN184481 vs. ExPASy Swiss-Prot
Match: TI11B_ARATH (Protein TIFY 11B OS=Arabidopsis thaliana GN=TIFY11B PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.571e-14
Identity = 52/146 (35.62%), Postives = 79/146 (54.11%), Query Frame = 2
Query:  227 PEKSSFSQTCSLLSQYLKEGGSFGDLSLGISSNIEANGVPEIPRRPAATTMNLFPVSDNSGQDVSVRNMVA--PRNWESMNLFPQQAGFAPKNDTPNMID-SSLNKPAPQT--AQMTIFYGGQVIAFNDFPADKANEIMQLASNGS 649
            PEKS+FSQ CSLLS+YLKE GSFG++++G++                 + + L    D  GQ   ++ +     R ++ +  F          D    ID S   K AP++  +Q+TIF+GG+V+ FN+FP DKA EIM++A   +
Sbjct:    7 PEKSNFSQRCSLLSRYLKEKGSFGNINMGLARK---------------SDLELAGKFDLKGQQNVIKKVETSETRPFKLIQKFSIGEASTSTEDKAIYIDLSEPAKVAPESGNSQLTIFFGGKVMVFNEFPEDKAKEIMEVAKEAN 137          
The following BLAST results are available for this feature:
BLAST of CN184481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
TI10A_ARATH1.315e-2648.65Protein TIFY 10A OS=Arabidopsis thaliana GN=TIFY10... [more]
TI10B_ARATH1.273e-2142.18Protein TIFY 10B OS=Arabidopsis thaliana GN=TIFY10... [more]
TI11B_ARATH2.571e-1435.62Protein TIFY 11B OS=Arabidopsis thaliana GN=TIFY11... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0005J08_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005J08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184481 ID=CN184481; Name=CN184481; organism=Citrus sinensis; type=EST; length=672bp
GCGGAAAAAGCACCCCAAATATGTTATTATTCCTCGTGTCCAATCAACAG
ATAAGGCTTTTTCTCCTTACAAATACAGATTGATCATCCAACAGAACAAC
TTCACCAATTCAATTCTGCAGCGTCAGTTGCAGCGCACTAGTTTTATTTT
TGCTCGTGGGTTTCCGCTTCTGAGTTGGTTAAACACAACAAGTATGGCGA
GCTCGTCGGAGATGTCGGTTAACTTGCCGGAGAAATCAAGTTTCTCTCAG
ACGTGTAGTCTTTTGAGTCAGTACTTGAAAGAGGGAGGTAGCTTTGGAGA
TCTTAGCCTCGGGATATCAAGCAACATTGAAGCTAATGGGGTACCCGAGA
TCCCGCGGCGGCCAGCAGCTACAACTATGAATTTGTTTCCAGTAAGTGAC
AACTCTGGACAAGATGTTTCAGTTCGAAACATGGTGGCTCCTCGAAACTG
GGAATCAATGAATTTGTTCCCTCAGCAAGCTGGTTTTGCTCCTAAGAATG
ATACCCCTAACATGATAGATTCAAGTTTAAACAAGCCCGCGCCGCAAACT
GCTCAAATGACTATATTTTATGGCGGACAAGTGATTGCGTTCAATGATTT
TCCTGCTGATAAAGCAAATGAAATCATGCAATTAGCAAGCAACGGGAGCT
CACTGAACCATGGTACCGCATA
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