DC887344

Overview
NameDC887344
Unique NameDC887344
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length468
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8892 contig Csv1_Contig8892:1..464. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887344 vs. ExPASy Swiss-Prot
Match: RS272_ARATH (40S ribosomal protein S27-2 OS=Arabidopsis thaliana GN=RPS27B PE=2 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 1.289e-37
Identity = 73/86 (84.88%), Postives = 77/86 (89.53%), Query Frame = -1
Query:  139 MVLQNDIDLLNPPAXXXXXXXXXKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD 396
            MVLQNDIDLLNPPA         KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ++LCQPTGG+A+LTEGCSFRRKGD
Sbjct:    1 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTILCQPTGGKAKLTEGCSFRRKGD 86          
BLAST of DC887344 vs. ExPASy Swiss-Prot
Match: RS27_HORVU (40S ribosomal protein S27 OS=Hordeum vulgare GN=RPS27 PE=3 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 1.862e-36
Identity = 73/86 (84.88%), Postives = 75/86 (87.21%), Query Frame = -1
Query:  139 MVLQNDIDLLNPPAXXXXXXXXXKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD 396
            MVLQNDIDLLNPPA         KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVC  CQ+VLCQPTGG+ARLTEGCSFRRKGD
Sbjct:    1 MVLQNDIDLLNPPAELEKLKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLCQPTGGKARLTEGCSFRRKGD 86          
BLAST of DC887344 vs. ExPASy Swiss-Prot
Match: RS271_ARATH (40S ribosomal protein S27-1 OS=Arabidopsis thaliana GN=RPS27A PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.334e-34
Identity = 68/84 (80.95%), Postives = 74/84 (88.10%), Query Frame = -1
Query:  145 MVLQNDIDLLNPPAXXXXXXXXXKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 396
            MVLQNDIDLLNPPA         KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CGNCQ++LC PTGG+A+LTEGCSFR+K
Sbjct:    1 MVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGNCQTLLCTPTGGKAKLTEGCSFRKK 84          
BLAST of DC887344 vs. ExPASy Swiss-Prot
Match: RS273_ARATH (40S ribosomal protein S27-3 OS=Arabidopsis thaliana GN=RPS27D PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 1.743e-34
Identity = 69/84 (82.14%), Postives = 73/84 (86.90%), Query Frame = -1
Query:  145 MVLQNDIDLLNPPAXXXXXXXXXKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 396
            MVLQNDIDLL+PP          KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQ+VLCQPTGG+ARL EGCSFR+K
Sbjct:    1 MVLQNDIDLLHPPPELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGKARLQEGCSFRKK 84          
BLAST of DC887344 vs. ExPASy Swiss-Prot
Match: RS27_CHLRE (40S ribosomal protein S27 OS=Chlamydomonas reinhardtii GN=RPS27 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.130e-32
Identity = 67/86 (77.91%), Postives = 70/86 (81.40%), Query Frame = -1
Query:  139 MVLQNDIDLLNPPAXXXXXXXXXKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRKGD 396
            MVL +DIDLLNPPA         KRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVV+CG+C SVLC PTG   RLTEGCSFRRK D
Sbjct:    1 MVLSSDIDLLNPPAELEKTKHKRKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVMCGSCSSVLCTPTGWPRRLTEGCSFRRKSD 86          
BLAST of DC887344 vs. ExPASy Swiss-Prot
Match: RS27_SCHPO (40S ribosomal protein S27 OS=Schizosaccharomyces pombe GN=rps27 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 4.596e-27
Identity = 56/78 (71.79%), Postives = 62/78 (79.49%), Query Frame = -1
Query:  145 IDLLNPPAXXXXXXXXXKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 378
            +DLLNP           K+LVQ P SFFMDVKC GCFNITTVFSH+QTVV+CG+C SVLCQPTGG+ARL EGCSFRRK
Sbjct:    5 VDLLNPSHESEMRKHKLKQLVQGPRSFFMDVKCPGCFNITTVFSHAQTVVICGSCASVLCQPTGGKARLMEGCSFRRK 82          
BLAST of DC887344 vs. ExPASy Swiss-Prot
Match: RS27_XENLA (40S ribosomal protein S27 OS=Xenopus laevis GN=rps27 PE=3 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 1.479e-25
Identity = 54/77 (70.13%), Postives = 61/77 (79.22%), Query Frame = -1
Query:  145 DLLNPPAXXXXXXXXXKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 375
            DLL+P           KRLVQSPNS+FMDVKC GC+ ITTVFSH+QTVV+C  C +VLCQPTGG+ARLTEGCSFRRK
Sbjct:    6 DLLHPTPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of DC887344 vs. ExPASy Swiss-Prot
Match: RS27_RAT (40S ribosomal protein S27 OS=Rattus norvegicus GN=Rps27 PE=2 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 1.479e-25
Identity = 54/77 (70.13%), Postives = 61/77 (79.22%), Query Frame = -1
Query:  145 DLLNPPAXXXXXXXXXKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 375
            DLL+P           KRLVQSPNS+FMDVKC GC+ ITTVFSH+QTVV+C  C +VLCQPTGG+ARLTEGCSFRRK
Sbjct:    6 DLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of DC887344 vs. ExPASy Swiss-Prot
Match: RS27_MOUSE (40S ribosomal protein S27 OS=Mus musculus GN=Rps27 PE=1 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 1.479e-25
Identity = 54/77 (70.13%), Postives = 61/77 (79.22%), Query Frame = -1
Query:  145 DLLNPPAXXXXXXXXXKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 375
            DLL+P           KRLVQSPNS+FMDVKC GC+ ITTVFSH+QTVV+C  C +VLCQPTGG+ARLTEGCSFRRK
Sbjct:    6 DLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
BLAST of DC887344 vs. ExPASy Swiss-Prot
Match: RS27_HUMAN (40S ribosomal protein S27 OS=Homo sapiens GN=RPS27 PE=1 SV=3)

HSP 1 Score: 115.161 bits (287), Expect = 1.479e-25
Identity = 54/77 (70.13%), Postives = 61/77 (79.22%), Query Frame = -1
Query:  145 DLLNPPAXXXXXXXXXKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQSVLCQPTGGRARLTEGCSFRRK 375
            DLL+P           KRLVQSPNS+FMDVKC GC+ ITTVFSH+QTVV+C  C +VLCQPTGG+ARLTEGCSFRRK
Sbjct:    6 DLLHPSPEEEKRKHKKKRLVQSPNSYFMDVKCPGCYKITTVFSHAQTVVLCVGCSTVLCQPTGGKARLTEGCSFRRK 82          
The following BLAST results are available for this feature:
BLAST of DC887344 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RS272_ARATH1.289e-3784.8840S ribosomal protein S27-2 OS=Arabidopsis thalian... [more]
RS27_HORVU1.862e-3684.8840S ribosomal protein S27 OS=Hordeum vulgare GN=RP... [more]
RS271_ARATH1.334e-3480.9540S ribosomal protein S27-1 OS=Arabidopsis thalian... [more]
RS273_ARATH1.743e-3482.1440S ribosomal protein S27-3 OS=Arabidopsis thalian... [more]
RS27_CHLRE2.130e-3277.9140S ribosomal protein S27 OS=Chlamydomonas reinhar... [more]
RS27_SCHPO4.596e-2771.7940S ribosomal protein S27 OS=Schizosaccharomyces p... [more]
RS27_XENLA1.479e-2570.1340S ribosomal protein S27 OS=Xenopus laevis GN=rps... [more]
RS27_RAT1.479e-2570.1340S ribosomal protein S27 OS=Rattus norvegicus GN=... [more]
RS27_MOUSE1.479e-2570.1340S ribosomal protein S27 OS=Mus musculus GN=Rps27... [more]
RS27_HUMAN1.479e-2570.1340S ribosomal protein S27 OS=Homo sapiens GN=RPS27... [more]

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Properties
Property NameValue
Genbank descriptionDC887344 EIC Citrus sinensis cDNA clone EIC0236 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887344 ID=DC887344; Name=DC887344; organism=Citrus sinensis; type=EST; length=468bp
TTCAACATAAGATCATCCACTACATTGAGTCAATTAAATTTGAAACAAAA
GGTTAAAACACTGTCTGACCTTAAACCTTCTACCAAACTCAATACATCAT
AACCAAAATGAAAAGATTTATCATTTAGGCAACACTTAGTCACCCTTTCT
TCTGAACGAGCATCCCTCAGTGAGTCTGGCACGACCACCAGTGGGCTGGC
ACAGAACGGATTGGCAGTTGCCACAAACCACAACAGTTTGAGAGTGGCTG
AAAACAGTTGTTATGTTGAAACAACCCTGACATTTCACATCCATGAAAAA
GGAATTGGGGGATTGAACAAGCCGCTTAAGCTTGTGCTTCTTCTTCTCAA
GCTCAGCAGGAGGATTCAACAAATCAATATCATTTTGGAGAACCATGCTT
GCTATTGCTACACGAGATCCAGGAGGAAACCCTAGAAATTCCTAGCTGCA
AAGAGTAACTCAGGAGGC
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