CN184455

Overview
NameCN184455
Unique NameCN184455
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length393
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7281 contig Csv1_Contig7281:929..1319. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN184455 vs. ExPASy Swiss-Prot
Match: ACT13_SOLTU (Actin-101 OS=Solanum tuberosum GN=AC101 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.058e-50
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 2 
Query:    5 MEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL 238
            MEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL
Sbjct:  271 MEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL 348

HSP 2 Score: 63.929 bits (154), Expect = 1.058e-50
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = 3 
Query:  240 ASLSTFQQMWISKGEYDESGPSIVHRKCF 326
            ASLSTFQQMWI+KGEYDESGPSIVHRKCF
Sbjct:  349 ASLSTFQQMWITKGEYDESGPSIVHRKCF 377
[Close]
BLAST of CN184455 vs. ExPASy Swiss-Prot
Match: ACT12_SOLTU (Actin-100 (Fragment) OS=Solanum tuberosum GN=AC100 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.059e-50
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 2 
Query:    5 MEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL 238
            MEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL
Sbjct:  251 MEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL 328

HSP 2 Score: 63.929 bits (154), Expect = 1.059e-50
Identity = 28/29 (96.55%), Postives = 29/29 (100.00%), Query Frame = 3 
Query:  240 ASLSTFQQMWISKGEYDESGPSIVHRKCF 326
            ASLSTFQQMWI+KGEYDESGPSIVHRKCF
Sbjct:  329 ASLSTFQQMWITKGEYDESGPSIVHRKCF 357
[Close]
BLAST of CN184455 vs. ExPASy Swiss-Prot
Match: ACT3_ORYSJ (Actin-3 OS=Oryza sativa subsp. japonica GN=ACT3 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.798e-50
Identity = 76/78 (97.44%), Postives = 77/78 (98.72%), Query Frame = 2 
Query:    5 MEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL 238
            MEA GIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL
Sbjct:  271 MEAPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL 348

HSP 2 Score: 65.0846 bits (157), Expect = 1.798e-50
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 3 
Query:  240 ASLSTFQQMWISKGEYDESGPSIVHRKCF 326
            ASLSTFQQMWISKGEYDESGPSIVHRKCF
Sbjct:  349 ASLSTFQQMWISKGEYDESGPSIVHRKCF 377
[Close]
BLAST of CN184455 vs. ExPASy Swiss-Prot
Match: ACT3_ORYSI (Actin-3 OS=Oryza sativa subsp. indica GN=ACT3 PE=2 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 1.798e-50
Identity = 76/78 (97.44%), Postives = 77/78 (98.72%), Query Frame = 2 
Query:    5 MEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL 238
            MEA GIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL
Sbjct:  271 MEAPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL 348

HSP 2 Score: 65.0846 bits (157), Expect = 1.798e-50
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 3 
Query:  240 ASLSTFQQMWISKGEYDESGPSIVHRKCF 326
            ASLSTFQQMWISKGEYDESGPSIVHRKCF
Sbjct:  349 ASLSTFQQMWISKGEYDESGPSIVHRKCF 377
[Close]
BLAST of CN184455 vs. ExPASy Swiss-Prot
Match: ACT3_SOYBN (Actin-3 OS=Glycine max GN=SAC3 PE=3 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 3.055e-50
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 2 
Query:    5 MEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL 238
            MEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMF GIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL
Sbjct:  270 MEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFLGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL 347

HSP 2 Score: 65.0846 bits (157), Expect = 3.055e-50
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 3 
Query:  240 ASLSTFQQMWISKGEYDESGPSIVHRKCF 326
            ASLSTFQQMWISKGEYDESGPSIVHRKCF
Sbjct:  348 ASLSTFQQMWISKGEYDESGPSIVHRKCF 376
[Close]
BLAST of CN184455 vs. ExPASy Swiss-Prot
Match: ACT7_ARATH (Actin-7 OS=Arabidopsis thaliana GN=ACT7 PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 3.982e-50
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 2 
Query:    5 MEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL 238
            MEA GIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL
Sbjct:  271 MEAPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL 348

HSP 2 Score: 62.7734 bits (151), Expect = 3.982e-50
Identity = 28/29 (96.55%), Postives = 28/29 (96.55%), Query Frame = 3 
Query:  240 ASLSTFQQMWISKGEYDESGPSIVHRKCF 326
            ASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  349 ASLSTFQQMWISKSEYDESGPSIVHRKCF 377
[Close]
BLAST of CN184455 vs. ExPASy Swiss-Prot
Match: ACT_GOSHI (Actin OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 5.190e-50
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 2 
Query:    5 MEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL 238
            MEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL
Sbjct:  271 MEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL 348

HSP 2 Score: 61.6178 bits (148), Expect = 5.190e-50
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 3 
Query:  240 ASLSTFQQMWISKGEYDESGPSIVHRKCF 326
            ASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  349 ASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of CN184455 vs. ExPASy Swiss-Prot
Match: ACT1_ORYSJ (Actin-1 OS=Oryza sativa subsp. japonica GN=ACT1 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 5.190e-50
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 2 
Query:    5 MEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL 238
            MEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL
Sbjct:  271 MEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL 348

HSP 2 Score: 61.6178 bits (148), Expect = 5.190e-50
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 3 
Query:  240 ASLSTFQQMWISKGEYDESGPSIVHRKCF 326
            ASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  349 ASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of CN184455 vs. ExPASy Swiss-Prot
Match: ACT1_ORYSI (Actin-1 OS=Oryza sativa subsp. indica GN=ACT1 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 5.190e-50
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 2 
Query:    5 MEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL 238
            MEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL
Sbjct:  271 MEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL 348

HSP 2 Score: 61.6178 bits (148), Expect = 5.190e-50
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 3 
Query:  240 ASLSTFQQMWISKGEYDESGPSIVHRKCF 326
            ASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  349 ASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
[Close]
BLAST of CN184455 vs. ExPASy Swiss-Prot
Match: ACT11_SOLTU (Actin-97 OS=Solanum tuberosum GN=AC97 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 5.190e-50
Identity = 77/78 (98.72%), Postives = 78/78 (100.00%), Query Frame = 2 
Query:    5 MEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL 238
            MEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGG+TMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL
Sbjct:  271 MEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSIL 348

HSP 2 Score: 61.6178 bits (148), Expect = 5.190e-50
Identity = 27/29 (93.10%), Postives = 28/29 (96.55%), Query Frame = 3 
Query:  240 ASLSTFQQMWISKGEYDESGPSIVHRKCF 326
            ASLSTFQQMWI+K EYDESGPSIVHRKCF
Sbjct:  349 ASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
The following BLAST results are available for this feature:
BLAST of CN184455 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 417
Match NameE-valueIdentityDescription
ACT13_SOLTU1.058e-5098.72Actin-101 OS=Solanum tuberosum GN=AC101 PE=3 SV=1[more]
ACT12_SOLTU1.059e-5098.72Actin-100 (Fragment) OS=Solanum tuberosum GN=AC100... [more]
ACT3_ORYSJ1.798e-5097.44Actin-3 OS=Oryza sativa subsp. japonica GN=ACT3 PE... [more]
ACT3_ORYSI1.798e-5097.44Actin-3 OS=Oryza sativa subsp. indica GN=ACT3 PE=2... [more]
ACT3_SOYBN3.055e-5098.72Actin-3 OS=Glycine max GN=SAC3 PE=3 SV=2[more]
ACT7_ARATH3.982e-5098.72Actin-7 OS=Arabidopsis thaliana GN=ACT7 PE=1 SV=1[more]
ACT_GOSHI5.190e-5098.72Actin OS=Gossypium hirsutum PE=3 SV=1[more]
ACT1_ORYSJ5.190e-5098.72Actin-1 OS=Oryza sativa subsp. japonica GN=ACT1 PE... [more]
ACT1_ORYSI5.190e-5098.72Actin-1 OS=Oryza sativa subsp. indica GN=ACT1 PE=2... [more]
ACT11_SOLTU5.190e-5098.72Actin-97 OS=Solanum tuberosum GN=AC97 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005I15_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005I15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184455 ID=CN184455; Name=CN184455; organism=Citrus sinensis; type=EST; length=393bp
GAGGATGGAAGCTGCTGGTATTCATGAGACTACCTACAACTCCATCATGA
AGTGTGATGTGGATATTAGAAAGGATCTGTATGGTAACATTGTTCTCAGT
GGGGGTTCAACTATGTTCCCCGGTATTGCCGACCGTATGAGCAAGGAAAT
CACAGCACTTGCTCCAAGCAGCATGAAGATCAAGGTCGTGGCTCCACCAG
AGAGAAAATACAGTGTTTGGATTGGAGGATCAATCCTTTGCATCCCTCAG
CACCTTCCAGCAGATGTGGATCTCAAAGGGCGAGTATGATGAGTCTGGTC
CATCCATTGTCCACAGGAAATGCTTCTAAGTTCTTTAAGTGCTTGATGGG
TGAGTTCTTTTTTTCCCATTTAGTTGGTTTTTTGTGTCTCGTT
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