DC887334

Overview
NameDC887334
Unique NameDC887334
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DC887334_ssr535 microsatellite DC887334_ssr535:535..555. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5599 contig Csv1_Contig5599:1..726. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887334 vs. ExPASy Swiss-Prot
Match: DNAJ6_ARATH (Chaperone protein dnaJ 6 OS=Arabidopsis thaliana GN=ATJ6 PE=1 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.193e-63
Identity = 119/166 (71.69%), Postives = 138/166 (83.13%), Query Frame = -1
Query:    1 DKDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRALYDQTGCVDDADLAGDVVQNLKEFFGAMYKKVTEADIEEFEANYRGSDSEXXXXXXXXXXXKGNMNRLFCSMLCSDQKLDSHRFKDILDETIAAGELKATKTYQ 498
            +  LYEVLGVER A+ QEI+KAY+KLAL+LHPDKN  D+EAK+KFQQLQKVISILGDEEKRA+YDQTG +DDAD+ GD  +NL++FF  MYKKV EADIEEFEANYRGS+SE           KG MNRLFCSMLCSD KLDSHRFKD+LDE IAAGE+K++K Y+
Sbjct:   27 ETSLYEVLGVERRATSQEIRKAYHKLALKLHPDKNQDDKEAKDKFQQLQKVISILGDEEKRAVYDQTGSIDDADIPGDAFENLRDFFRDMYKKVNEADIEEFEANYRGSESEKKDLLELFNKFKGKMNRLFCSMLCSDPKLDSHRFKDMLDEAIAAGEVKSSKAYE 192          
BLAST of DC887334 vs. ExPASy Swiss-Prot
Match: DNJC9_HUMAN (DnaJ homolog subfamily C member 9 OS=Homo sapiens GN=DNAJC9 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.059e-23
Identity = 60/165 (36.36%), Postives = 101/165 (61.21%), Query Frame = -1
Query:    4 DLYEVLGVERTASQQEIKKAYYKLALRLHPDK-NPGD-EEAKEKFQQLQKVISILGDEEKRALYDQTGCVDDADLAGDVVQNLKEFFGAMYKKVTEADIEEFEANYRGSDSEXXXXXXXXXXXKGNMNRLFCSMLCSDQKLDSHRFKDILDETIAAGELKATKTY 492
            DLY VLGV R AS  E+++ Y+K++L++HPD+   GD E+A  +FQ L KV S+L D E+RA+YD+ G VD+        ++ + ++  ++KK++  DI+ FE  Y+GS+ E           KG+M+++  S+LC  Q  +  R ++I+ + I AGE+ +   +
Sbjct:   15 DLYRVLGVRREASDGEVRRGYHKVSLQVHPDRVGEGDKEDATRRFQILGKVYSVLSDREQRAVYDEQGTVDEDSPVLTQDRDWEAYWRLLFKKISLEDIQAFEKTYKGSEEELADIKQAYLDFKGDMDQIMESVLCV-QYTEEPRIRNIIQQAIDAGEVPSYNAF 178          
BLAST of DC887334 vs. ExPASy Swiss-Prot
Match: DNJC9_MOUSE (DnaJ homolog subfamily C member 9 OS=Mus musculus GN=Dnajc9 PE=2 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.334e-22
Identity = 56/165 (33.94%), Postives = 101/165 (61.21%), Query Frame = -1
Query:    4 DLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGD--EEAKEKFQQLQKVISILGDEEKRALYDQTGCVDDADLAGDVVQNLKEFFGAMYKKVTEADIEEFEANYRGSDSEXXXXXXXXXXXKGNMNRLFCSMLCSDQKLDSHRFKDILDETIAAGELKATKTY 492
            DLY+VLGV R AS  E+++ Y+K++L++HPD+   D  E+A  +FQ L +V ++L D+E++A+YD+ G VD+     +  ++   ++  ++KK++  DI+ FE  Y+GS+ E           KG+M+++  S+LC  Q  D  R ++I+ + I + E+ A   +
Sbjct:   15 DLYQVLGVRREASDGEVRRGYHKVSLQVHPDRVEEDQKEDATRRFQILGRVYAVLSDKEQKAVYDEQGTVDEDSAGLNQDRDWDAYWRLLFKKISLEDIQAFEKTYKGSEEELNDIKQAYLDFKGDMDQIMESVLCV-QYTDEPRIRNIIQKAIESKEIPAYSAF 178          
BLAST of DC887334 vs. ExPASy Swiss-Prot
Match: Y6693_DROME (J domain-containing protein CG6693 OS=Drosophila melanogaster GN=CG6693 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.631e-20
Identity = 56/166 (33.73%), Postives = 97/166 (58.43%), Query Frame = -1
Query:    4 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAK--EKFQQLQKVISILGDEEKRALYDQTGCVDDADLAGDVVQNLKEFFGAMYKKVTEADIEEFEANYRGSDSEXXXXXXXXXXXKGNMNRLFCSMLCSDQKLDSHRFKDILDETIAAGELKATKTY 495
            +D+Y+++ + R A ++E+KKAY+KL+L +HPD+ P +++A+  EKF+ L K+  +L D +KRALYD+ G +DD D +   + +  E +  ++K +TE DI  +E  Y  S+ E           KG +N L   +     + D  R + I+ + IA+GE+   K +
Sbjct:   14 RDVYKLMELARGAGEKEVKKAYHKLSLLVHPDRVPEEQKAESTEKFKVLSKLYQVLTDTQKRALYDEQGVIDDDDESESKLSSWLELWSKIFKPITEEDINNYEKEYVESELERTDLKKAYLGGKGCINYLMNHVPFMKVE-DEPRIQKIVQDMIASGEVPEYKIF 178          
BLAST of DC887334 vs. ExPASy Swiss-Prot
Match: DNAJ_THETN (Chaperone protein dnaJ OS=Thermoanaerobacter tengcongensis GN=dnaJ PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.802e-18
Identity = 41/67 (61.19%), Postives = 54/67 (80.60%), Query Frame = -1
Query:  295 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRALYDQTG 495
            KDLYE+LGV+R ASQ+EIKKAY +LA + HPD NPGD+EA++KF+++ +   IL D +KRA YDQ G
Sbjct:    4 KDLYEILGVDRNASQEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFG 70          
BLAST of DC887334 vs. ExPASy Swiss-Prot
Match: DNAJ_HAEPS (Chaperone protein dnaJ OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.879e-17
Identity = 39/67 (58.21%), Postives = 55/67 (82.09%), Query Frame = -1
Query:  295 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRALYDQTG 495
            KD YEVLG+++ AS+QEIK+AY +LA + HPDKN G +EA+EKF+++++   +LGD EKRA+YDQ G
Sbjct:    4 KDYYEVLGLQKGASEQEIKRAYKRLAAKHHPDKNQGSKEAEEKFKEIKEAYEVLGDNEKRAMYDQYG 70          
BLAST of DC887334 vs. ExPASy Swiss-Prot
Match: DNAJ_WOLTR (Chaperone protein dnaJ OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.415e-17
Identity = 47/118 (39.83%), Postives = 66/118 (55.93%), Query Frame = -1
Query:  169 KDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRALYDQTG---------CVDDADLAGDVVQNLKEFFGAMYKKVTEADIEEFEANYRGSD 495
            KD Y++LGV+R AS  EIKKAY KLAL+ HPD+NPG++EA+EKF+++     +L D EKRA YD+ G                AGD      +FFG  +   + +  +       G+D
Sbjct:    4 KDYYKLLGVDRNASTDEIKKAYKKLALKYHPDRNPGNKEAEEKFKEITAAYEVLSDSEKRAGYDRYGHEGASGGFDFSQGFGSAGDFSDIFNDFFGGEFGSSSRSKAKRSTTGVPGAD 121          
BLAST of DC887334 vs. ExPASy Swiss-Prot
Match: DNAJ_NEIMF (Chaperone protein dnaJ OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.378e-17
Identity = 39/68 (57.35%), Postives = 53/68 (77.94%), Query Frame = -1
Query:  295 DKDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRALYDQTG 498
            ++D Y  LGV RTA+  EIKKAY KLA++ HPD+NP ++EA+EKF+++QK    L D+EKRA+YDQ G
Sbjct:    3 NQDFYATLGVARTATDDEIKKAYRKLAMKYHPDRNPDNKEAEEKFKEVQKAYETLSDKEKRAMYDQYG 70          
BLAST of DC887334 vs. ExPASy Swiss-Prot
Match: DNAJ_NEIMB (Chaperone protein dnaJ OS=Neisseria meningitidis serogroup B GN=dnaJ PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.378e-17
Identity = 39/68 (57.35%), Postives = 53/68 (77.94%), Query Frame = -1
Query:  295 DKDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRALYDQTG 498
            ++D Y  LGV RTA+  EIKKAY KLA++ HPD+NP ++EA+EKF+++QK    L D+EKRA+YDQ G
Sbjct:    3 NQDFYATLGVARTATDDEIKKAYRKLAMKYHPDRNPDNKEAEEKFKEVQKAYETLSDKEKRAMYDQYG 70          
BLAST of DC887334 vs. ExPASy Swiss-Prot
Match: DNAJ_NEIMA (Chaperone protein dnaJ OS=Neisseria meningitidis serogroup A GN=dnaJ PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.378e-17
Identity = 39/68 (57.35%), Postives = 53/68 (77.94%), Query Frame = -1
Query:  295 DKDLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRALYDQTG 498
            ++D Y  LGV RTA+  EIKKAY KLA++ HPD+NP ++EA+EKF+++QK    L D+EKRA+YDQ G
Sbjct:    3 NQDFYATLGVARTATDDEIKKAYRKLAMKYHPDRNPDNKEAEEKFKEVQKAYETLSDKEKRAMYDQYG 70          
The following BLAST results are available for this feature:
BLAST of DC887334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAJ6_ARATH1.193e-6371.69Chaperone protein dnaJ 6 OS=Arabidopsis thaliana G... [more]
DNJC9_HUMAN2.059e-2336.36DnaJ homolog subfamily C member 9 OS=Homo sapiens ... [more]
DNJC9_MOUSE1.334e-2233.94DnaJ homolog subfamily C member 9 OS=Mus musculus ... [more]
Y6693_DROME1.631e-2033.73J domain-containing protein CG6693 OS=Drosophila m... [more]
DNAJ_THETN5.802e-1861.19Chaperone protein dnaJ OS=Thermoanaerobacter tengc... [more]
DNAJ_HAEPS2.879e-1758.21Chaperone protein dnaJ OS=Haemophilus parasuis ser... [more]
DNAJ_WOLTR6.415e-1739.83Chaperone protein dnaJ OS=Wolbachia sp. subsp. Bru... [more]
DNAJ_NEIMF8.378e-1757.35Chaperone protein dnaJ OS=Neisseria meningitidis s... [more]
DNAJ_NEIMB8.378e-1757.35Chaperone protein dnaJ OS=Neisseria meningitidis s... [more]
DNAJ_NEIMA8.378e-1757.35Chaperone protein dnaJ OS=Neisseria meningitidis s... [more]

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Properties
Property NameValue
Genbank descriptionDC887334 EIC Citrus sinensis cDNA clone EIC0215 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887334 ID=DC887334; Name=DC887334; organism=Citrus sinensis; type=EST; length=726bp
TTGGTAGGTTTTAGTTGCTTTCAGTTCTCCTGCAGCTATTGTCTCGTCAA
GAATATCCTTGAAACGGTGTGAATCAAGTTTCTGGTCCGAACAAAGCATT
GAACAGAAAAGCCTGTTCATATTCCCCTTGTACTTCTTATACAGATCAAT
CAAATCTTTCTTCTCTGAATCAGATCCCCTGTAGTTTGCCTCAAACTCTT
CAATATCAGCCTCAGTGACCTTTTTGTACATGGCTCCAAAAAACTCTTTC
AAATTTTGAACAACATCCCCAGCCAGGTCAGCATCATCGACACAACCGGT
CTGGTCATAAAGAGCCCGTTTTTCTTCATCACCAAGAATTGAAATGACCT
TTTGTAGTTGTTGAAATTTCTCCTTCGCCTCCTCATCACCAGGATTTTTA
TCTGGATGGAGTCGTAAGGCCAATTTATAGTATGCTTTCTTTATTTCCTG
TTGAGATGCTGTCCTTTCAACACCAAGAACCTCATAAAGGTCCTTATCAT
TTGAAGAAGATTGATTCAGATTCTCCTGATTTAGTTCTTCTTCTTCTTCT
TCTTCATGCGAAACCCTAGATTTCTTCTGCTTTCCCATTTTACCCCTTTT
AAATTTCTTTACTTTGCTTTCCAAAGTGAAAGAAGCAAAGGGTTGGGGTT
CTTATACCAGTGGTAGTACTGGTGCTGAATAAAATTTTCGTCTCCGATTT
ATTCCCGCCATTTCGGCTCTTTTCCC
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