EY666410

Overview
NameEY666410
Unique NameEY666410
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length825
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY666410 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 2.136e-54
Identity = 103/148 (69.59%), Postives = 121/148 (81.76%), Query Frame = 3
Query:  111 PLSFNGSGAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYITQGLRTYNLDNTIDSLYIAPAFMDKLVVHITKNFMSLTNISVPPHLG 554
            P + NGS ++ SVPSS+F G+SLKKV+SR   SKV S S +I A VDE+KQT +DRWKGLA+D SDDQQDITRGKG VDSLFQAP G+GTH+A+MSSY+YI+ GLR YN DN +D  YIAPAFMDKLVVHITKNFM+L N+ VP  LG
Sbjct:   15 PPNLNGSSSSASVPSSTFLGSSLKKVNSRFTNSKVSSGSLRIVASVDEDKQTDKDRWKGLAFDTSDDQQDITRGKGKVDSLFQAPQGSGTHFAIMSSYEYISTGLRQYNFDNNMDGYYIAPAFMDKLVVHITKNFMTLPNMKVPLILG 162          
BLAST of EY666410 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.261e-53
Identity = 106/150 (70.67%), Postives = 124/150 (82.67%), Query Frame = 3
Query:  111 PLSFNGSGAATS-VPSSSFFGTSLKKVSSRIPPSKVPSASFKITA-EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYITQGLRTYNLDNTIDSLYIAPAFMDKLVVHITKNFMSLTNISVPPHLG 554
            PLS NGSGA  S VPS++FFG+SLKK +++ P  K  S +FKI A E+ E++QT +D+WKGLAYD SDDQQDITRGKG VD+LFQAPM +GTHYAVMSSYDYI+QGLR YNLDN +D  YIAPAFMDKLVVHITKNF+SL NI +P  LG
Sbjct:   15 PLSLNGSGARASLVPSTAFFGSSLKKSAAKFP--KASSGNFKIVAQEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILG 162          
BLAST of EY666410 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.261e-53
Identity = 106/150 (70.67%), Postives = 124/150 (82.67%), Query Frame = 3
Query:  111 PLSFNGSGAATS-VPSSSFFGTSLKKVSSRIPPSKVPSASFKITA-EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYITQGLRTYNLDNTIDSLYIAPAFMDKLVVHITKNFMSLTNISVPPHLG 554
            PLS NGSGA  S VPS++FFG+SLKK +++ P  K  S +FKI A E+ E++QT +D+WKGLAYD SDDQQDITRGKG VD+LFQAPM +GTHYAVMSSYDYI+QGLR YNLDN +D  YIAPAFMDKLVVHITKNF+SL NI +P  LG
Sbjct:   15 PLSLNGSGARASLVPSTAFFGSSLKKSAAKFP--KASSGNFKIVAQEISEDQQTDKDKWKGLAYDISDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLRQYNLDNNMDGFYIAPAFMDKLVVHITKNFLSLPNIKIPLILG 162          
BLAST of EY666410 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.210e-51
Identity = 104/151 (68.87%), Postives = 119/151 (78.81%), Query Frame = 3
Query:  114 LSFNGSGAATSVPSSSFFGTSLKKV-SSRIPPSKVPSASFKITA---EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYITQGLRTYNLDNTIDSLYIAPAFMDKLVVHITKNFMSLTNISVPPHLG 554
            L+ NGSG   S PSS+FFGTSLKKV SSR+P SK+ S SFKI A   E++E +QT+ DRW+GLAYD SDDQQDITRGKG VDSLFQAPM  GTHYAV+SS+ Y++ GLR YN DN  D  YIAPAF+DKLVVHI KNFM+L NI VP  LG
Sbjct:   16 LNLNGSGGGASGPSSAFFGTSLKKVISSRVPNSKLTSGSFKIVAADKEIEETQQTEGDRWRGLAYDVSDDQQDITRGKGLVDSLFQAPMDAGTHYAVISSHKYLSAGLRQYNFDNIKDGFYIAPAFLDKLVVHIAKNFMTLPNIKVPLILG 166          
BLAST of EY666410 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 4.924e-51
Identity = 105/151 (69.54%), Postives = 121/151 (80.13%), Query Frame = 3
Query:  114 LSFNGSGAATSVPSSSFFGTSLKK-VSSRIPPSKVPSASFKITA---EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYITQGLRTYNLDNTIDSLYIAPAFMDKLVVHITKNFMSLTNISVPPHLG 554
            L+ NGSGA  S P+S+FFGTSLKK V+SR+P SKV + SFKI A   E++E++QT +DRWKGLAYD SDDQQDITRGKG VD LFQAPM  GTHYAVMSSY+Y++ GLR   LDN  D  YIAPAF+DKLVVHITKNFM+L NI VP  LG
Sbjct:   16 LNLNGSGAGASAPTSAFFGTSLKKAVASRVPNSKVTNGSFKIVAAEKEIEESQQTNKDRWKGLAYDISDDQQDITRGKGMVDPLFQAPMDAGTHYAVMSSYEYLSTGLR--QLDNIKDGFYIAPAFLDKLVVHITKNFMTLPNIKVPLILG 164          
BLAST of EY666410 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 8.399e-51
Identity = 118/215 (54.88%), Postives = 141/215 (65.58%), Query Frame = 3
Query:  111 PLSFNGSGAATSVPSSSFFGTSLKKVSSR-IPPSKVPSASFKITAE---VDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYITQGLRTYNLDNTIDSLYIAPAFMDKLVVHITKNFMSLTNISVPPHLGYMLEVKE*EQTFHCQVNIRQEGASTHL*RMPEYFESGFAL*NTPTFYTRQLPSTHSHINRKSN 743
            PLS N S A TSVPS++FFG +LKKV  + +   KV + S +I AE   VD  KQT  DRWKGL  D SDDQQDITRGKG VDSLFQAP GTGTH+AV+ SY+Y++QGLR YNLDN +D  YIAPAFMDKLVVHITKNF+ L NI VP  LG +   K   ++F C++  R+ G +  +    E  ESG A    P    RQ     + I RK N
Sbjct:   15 PLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNKSLRIVAEQIDVDPKKQTDSDRWKGLVQDFSDDQQDITRGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILG-IWGGKGQGKSFQCELVFRKMGINPIMMSAGE-LESGNA--GEPAKLIRQRYREAAEIIRKGN 225          
BLAST of EY666410 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 7.110e-50
Identity = 116/219 (52.97%), Postives = 141/219 (64.38%), Query Frame = 3
Query:   99 AAAVPLSFNGSGAATSVPSSSFFGTSLKKVSSR-IPPSKVPSASFKITAE---VDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYITQGLRTYNLDNTIDSLYIAPAFMDKLVVHITKNFMSLTNISVPPHLGYMLEVKE*EQTFHCQVNIRQEGASTHL*RMPEYFESGFAL*NTPTFYTRQLPSTHSHINRKSN 743
            A   PLS N S A TSVPS++FFG +LKKV  + +   KV + S +I AE    D  KQT  DRWKGL  D SDDQQDI RGKG VDSLFQAP GTGTH+AV+ SY+Y++QGLR YN+DNT+D  YIAP+FMDKLVVHITKNF+ L NI VP  LG +   K   ++F C++  R+ G +  +    E  ESG A    P    RQ     + I RK N
Sbjct:   11 ANKAPLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNRSLRIAAEEKDADPKKQTYSDRWKGLVQDFSDDQQDIARGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLRQYNMDNTLDGFYIAPSFMDKLVVHITKNFLKLPNIKVPLILG-VWGGKGQGKSFQCELVFRKMGINPIMMSAGE-LESGNA--GEPAKLIRQRYREAAEIIRKGN 225          
BLAST of EY666410 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 2.702e-49
Identity = 108/185 (58.38%), Postives = 133/185 (71.89%), Query Frame = 3
Query:   96 MAAAV---------PLSFNGSGA-ATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYITQGLRTYNLDNTIDSLYIAPAFMDKLVVHITKNFMSLTNISVPPHLGYMLEVKE*EQTFHCQVNIRQEG 620
            MAAAV         PLS NGSG+ A S P+S+F G  +  VS     +K  + SFK+ A V E+KQT  DRW+GLAYD SDDQQDITRGKG VDS+FQAPMGTGTH+AV+SSY+Y++QGLR YNLDN +D  YIAPAFMDKLVVHITKNF++L NI VP  LG +   K   ++F C++ + + G
Sbjct:    1 MAAAVSTVGAINRAPLSLNGSGSGAVSAPASTFLGKKVVTVSRFAQSNKKSNGSFKVLA-VKEDKQTDGDRWRGLAYDTSDDQQDITRGKGMVDSVFQAPMGTGTHHAVLSSYEYVSQGLRQYNLDNMMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILG-IWGGKGQGKSFQCELVMAKMG 183          
BLAST of EY666410 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.287e-48
Identity = 114/217 (52.53%), Postives = 145/217 (66.82%), Query Frame = 3
Query:   99 AAAVPLSFNGSGAATSVPSSSFFGTSLKKVSSR-IPPSKVPSASFKITA-EVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYITQGLRTYNLDNTIDSLYIAPAFMDKLVVHITKNFMSLTNISVPPHLGYMLEVKE*EQTFHCQVNIRQEGASTHL*RMPEYFESGFAL*NTPTFYTRQLPSTHSHINRKSN 743
            A+  PLS N S A TSVPS++FFG SLKKV ++ +   KV + + ++ A EVDE   TK+DRWKGL  + SDDQQDI RGKG VDSLFQAP GTGTH+A+M+SY+Y++Q L+TY LDN +D  YIAPAFMDKLVVHITKNF++L NI VP  LG +   K   ++F C++  R+ G +  +    E  ESG A    P    RQ     + I RK N
Sbjct:   11 ASKAPLSLNNSVAGTSVPSTAFFGKSLKKVYAKGVSSPKVSNRNLRVVAQEVDE---TKEDRWKGLYDNTSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMNSYEYVSQALKTYQLDNKLDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILG-VWGGKGQGKSFQCELVFRKMGINPIMMSAGE-LESGNA--GEPAKLIRQRYREAAEIIRKGN 220          
BLAST of EY666410 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.255e-46
Identity = 94/155 (60.65%), Postives = 114/155 (73.55%), Query Frame = 3
Query:   90 SLMAAAVPLSFNGSGAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTKQDRWKGLAYDESDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYITQGLRTYNLDNTIDSLYIAPAFMDKLVVHITKNFMSLTNISVPPHLG 554
            S + A    + N S     VP+S+F G+ LK VSSR   SK+ + +FKI AE DE KQT++D+W+GLA+D SDDQQDITRGKG  D LFQAPMGTGTH AV+SSY+YI+ GLR Y+ DN +D  YIAPAFMDKL VHI KNF++L NI VP  LG
Sbjct:    6 STIGAVNRTTLNNSNYGGLVPNSAFLGSRLK-VSSRFTTSKMVTGNFKIVAEQDEEKQTEKDKWRGLAFDTSDDQQDITRGKGLADPLFQAPMGTGTHNAVLSSYEYISAGLRDYSYDNNVDGFYIAPAFMDKLTVHIVKNFLTLPNIKVPLILG 159          
The following BLAST results are available for this feature:
BLAST of EY666410 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RCA_MALDO2.136e-5469.59Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR5.261e-5370.67Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_LARTR5.261e-5370.67Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU2.210e-5168.87Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU4.924e-5169.54Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_TOBAC8.399e-5154.88Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC7.110e-5052.97Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH2.702e-4958.38Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN2.287e-4852.53Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA1.255e-4660.65Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-017-E11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666410 ID=EY666410; Name=EY666410; organism=Citrus sinensis; type=EST; length=825bp
CACGCACTCAGCGCATTGCTTCGCTTTCCTTTGCCTGCATTACAGCGTGA
CCCTTTAGCTACTTCAATCACAGCCGTCCAATTCTCGCTAGCCTAATGGC
TGCTGCTGTACCGTTGAGCTTCAATGGCTCTGGTGCTGCAACCTCTGTCC
CAAGCTCATCTTTCTTTGGCACCAGCTTGAAGAAGGTAAGCTCAAGGATC
CCCCCATCCAAGGTCCCTTCTGCGAGCTTCAAGATTACTGCTGAAGTCGA
TGAGAACAAGCAGACCAAGCAGGACAGATGGAAGGGCCTTGCCTACGACG
AATCTGATGACCAACAAGACATCACCAGAGGAAAAGGTGCTGTGGACTCT
CTGTTCCAAGCCCCCATGGGAACCGGAACTCACTATGCTGTCATGAGTTC
TTATGACTACATCACCCAAGGTCTCCGCACATACAACTTGGACAACACGA
TCGACAGTCTCTACATTGCCCCTGCTTTCATGGACAAGCTTGTTGTTCAC
ATCACCAAGAACTTCATGTCCCTGACCAACATCAGTGTTCCTCCTCATCT
TGGGTATATGTTGGAAGTAAAGGAATAGGAACAAACCTTCCACTGTCAAG
TTAATATTCGCCAAGAAGGTGCATCAACCCATTTATGAAGAATGCCCGAA
TACTTCGAATCCGGGTTTGCGCTTTAGAACACACCTACTTTTTACACACG
GCAGTTACCTAGCACGCACTCCCATATTAACAGGAAATCGAACAAAGGTC
ACCACCTCTGAACATACCAGTTTCCTTCCCTCCCAACCCCCCCCATAGAG
AACCCCACCAACCCTCCAACAGTCC
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