CN184426
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN184426 vs. ExPASy Swiss-Prot
Match: SMD2_DROME (Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster GN=snRNP2 PE=1 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 1.092e-25 Identity = 53/61 (86.89%), Postives = 58/61 (95.08%), Query Frame = 1 Query: 139 FHTGPLSVLMMSVKNNTQVLINCRNNQKLLGRVRAFDRHCNMVLDNVWEMWTELPKTGKGK 321 F+TGPLSVL SVKNNTQVLINCRNN+KLLGRV+AFDRHCNMVL+NV EMWTELP+TGKGK Sbjct: 23 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGK 83
BLAST of CN184426 vs. ExPASy Swiss-Prot
Match: SMD2_MOUSE (Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus GN=Snrpd2 PE=2 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 3.176e-25 Identity = 52/61 (85.25%), Postives = 58/61 (95.08%), Query Frame = 1 Query: 139 FHTGPLSVLMMSVKNNTQVLINCRNNQKLLGRVRAFDRHCNMVLDNVWEMWTELPKTGKGK 321 F+TGPLSVL SVKNNTQVLINCRNN+KLLGRV+AFDRHCNMVL+NV EMWTE+PK+GKGK Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGK 84
BLAST of CN184426 vs. ExPASy Swiss-Prot
Match: SMD2_HUMAN (Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens GN=SNRPD2 PE=1 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 3.176e-25 Identity = 52/61 (85.25%), Postives = 58/61 (95.08%), Query Frame = 1 Query: 139 FHTGPLSVLMMSVKNNTQVLINCRNNQKLLGRVRAFDRHCNMVLDNVWEMWTELPKTGKGK 321 F+TGPLSVL SVKNNTQVLINCRNN+KLLGRV+AFDRHCNMVL+NV EMWTE+PK+GKGK Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGK 84
BLAST of CN184426 vs. ExPASy Swiss-Prot
Match: SMD2_BOVIN (Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus GN=SNRPD2 PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 3.176e-25 Identity = 52/61 (85.25%), Postives = 58/61 (95.08%), Query Frame = 1 Query: 139 FHTGPLSVLMMSVKNNTQVLINCRNNQKLLGRVRAFDRHCNMVLDNVWEMWTELPKTGKGK 321 F+TGPLSVL SVKNNTQVLINCRNN+KLLGRV+AFDRHCNMVL+NV EMWTE+PK+GKGK Sbjct: 24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGK 84
BLAST of CN184426 vs. ExPASy Swiss-Prot
Match: SMD2_CAEEL (Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis elegans GN=snr-4 PE=1 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 5.991e-24 Identity = 50/61 (81.97%), Postives = 56/61 (91.80%), Query Frame = 1 Query: 139 FHTGPLSVLMMSVKNNTQVLINCRNNQKLLGRVRAFDRHCNMVLDNVWEMWTELPKTGKGK 321 F+ GPLS+L SVKNN QVLINCRNN+KLLGRV+AFDRHCNMVL+NV EMWTE+PKTGKGK Sbjct: 24 FNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGK 84
BLAST of CN184426 vs. ExPASy Swiss-Prot
Match: SMD2_DICDI (Probable small nuclear ribonucleoprotein Sm D2 OS=Dictyostelium discoideum GN=snrpd2 PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 5.607e-22 Identity = 48/58 (82.76%), Postives = 53/58 (91.38%), Query Frame = 1 Query: 148 GPLSVLMMSVKNNTQVLINCRNNQKLLGRVRAFDRHCNMVLDNVWEMWTELPKTGKGK 321 GPLS+LM SV NNTQVLIN RNN+KLLGRVRAFDRHCNMVL+NV E+WTE+PKT KGK Sbjct: 18 GPLSILMDSVNNNTQVLINVRNNKKLLGRVRAFDRHCNMVLENVKEIWTEVPKTAKGK 75
BLAST of CN184426 vs. ExPASy Swiss-Prot
Match: SMD2_SCHPO (Probable small nuclear ribonucleoprotein Sm D2 OS=Schizosaccharomyces pombe GN=smd2 PE=2 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 1.293e-18 Identity = 43/61 (70.49%), Postives = 49/61 (80.33%), Query Frame = 1 Query: 139 FHTGPLSVLMMSVKNNTQVLINCRNNQKLLGRVRAFDRHCNMVLDNVWEMWTELPKTGKGK 321 F GPLSVL +VKN+ QVLINCRNN+KLL RV+AFDRH NMVL+NV EMWTE +T GK Sbjct: 25 FSAGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTEKKRTASGK 85
BLAST of CN184426 vs. ExPASy Swiss-Prot
Match: SMD2_YEAST (Small nuclear ribonucleoprotein Sm D2 OS=Saccharomyces cerevisiae GN=SMD2 PE=1 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 8.973e-12 Identity = 32/59 (54.24%), Postives = 44/59 (74.58%), Query Frame = 1 Query: 139 FHTGPLSVLMMSVKNNTQVLINCRNNQKLLGRVRAFDRHCNMVLDNVWEMWTELPKTGK 315 F GP+S++ ++ T V+I+ RNN K++ RV+AFDRHCNMVL+NV E+WTE K GK Sbjct: 26 FKHGPMSLINDAMVTRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE--KKGK 82 The following BLAST results are available for this feature:
BLAST of CN184426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CN184426 ID=CN184426; Name=CN184426; organism=Citrus sinensis; type=EST; length=321bpback to top |