CN184426

Overview
NameCN184426
Unique NameCN184426
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length321
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184426 vs. ExPASy Swiss-Prot
Match: SMD2_DROME (Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster GN=snRNP2 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.092e-25
Identity = 53/61 (86.89%), Postives = 58/61 (95.08%), Query Frame = 1
Query:  139 FHTGPLSVLMMSVKNNTQVLINCRNNQKLLGRVRAFDRHCNMVLDNVWEMWTELPKTGKGK 321
            F+TGPLSVL  SVKNNTQVLINCRNN+KLLGRV+AFDRHCNMVL+NV EMWTELP+TGKGK
Sbjct:   23 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGK 83          
BLAST of CN184426 vs. ExPASy Swiss-Prot
Match: SMD2_MOUSE (Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus GN=Snrpd2 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.176e-25
Identity = 52/61 (85.25%), Postives = 58/61 (95.08%), Query Frame = 1
Query:  139 FHTGPLSVLMMSVKNNTQVLINCRNNQKLLGRVRAFDRHCNMVLDNVWEMWTELPKTGKGK 321
            F+TGPLSVL  SVKNNTQVLINCRNN+KLLGRV+AFDRHCNMVL+NV EMWTE+PK+GKGK
Sbjct:   24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGK 84          
BLAST of CN184426 vs. ExPASy Swiss-Prot
Match: SMD2_HUMAN (Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens GN=SNRPD2 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.176e-25
Identity = 52/61 (85.25%), Postives = 58/61 (95.08%), Query Frame = 1
Query:  139 FHTGPLSVLMMSVKNNTQVLINCRNNQKLLGRVRAFDRHCNMVLDNVWEMWTELPKTGKGK 321
            F+TGPLSVL  SVKNNTQVLINCRNN+KLLGRV+AFDRHCNMVL+NV EMWTE+PK+GKGK
Sbjct:   24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGK 84          
BLAST of CN184426 vs. ExPASy Swiss-Prot
Match: SMD2_BOVIN (Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus GN=SNRPD2 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.176e-25
Identity = 52/61 (85.25%), Postives = 58/61 (95.08%), Query Frame = 1
Query:  139 FHTGPLSVLMMSVKNNTQVLINCRNNQKLLGRVRAFDRHCNMVLDNVWEMWTELPKTGKGK 321
            F+TGPLSVL  SVKNNTQVLINCRNN+KLLGRV+AFDRHCNMVL+NV EMWTE+PK+GKGK
Sbjct:   24 FNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGK 84          
BLAST of CN184426 vs. ExPASy Swiss-Prot
Match: SMD2_CAEEL (Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis elegans GN=snr-4 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.991e-24
Identity = 50/61 (81.97%), Postives = 56/61 (91.80%), Query Frame = 1
Query:  139 FHTGPLSVLMMSVKNNTQVLINCRNNQKLLGRVRAFDRHCNMVLDNVWEMWTELPKTGKGK 321
            F+ GPLS+L  SVKNN QVLINCRNN+KLLGRV+AFDRHCNMVL+NV EMWTE+PKTGKGK
Sbjct:   24 FNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGK 84          
BLAST of CN184426 vs. ExPASy Swiss-Prot
Match: SMD2_DICDI (Probable small nuclear ribonucleoprotein Sm D2 OS=Dictyostelium discoideum GN=snrpd2 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 5.607e-22
Identity = 48/58 (82.76%), Postives = 53/58 (91.38%), Query Frame = 1
Query:  148 GPLSVLMMSVKNNTQVLINCRNNQKLLGRVRAFDRHCNMVLDNVWEMWTELPKTGKGK 321
            GPLS+LM SV NNTQVLIN RNN+KLLGRVRAFDRHCNMVL+NV E+WTE+PKT KGK
Sbjct:   18 GPLSILMDSVNNNTQVLINVRNNKKLLGRVRAFDRHCNMVLENVKEIWTEVPKTAKGK 75          
BLAST of CN184426 vs. ExPASy Swiss-Prot
Match: SMD2_SCHPO (Probable small nuclear ribonucleoprotein Sm D2 OS=Schizosaccharomyces pombe GN=smd2 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.293e-18
Identity = 43/61 (70.49%), Postives = 49/61 (80.33%), Query Frame = 1
Query:  139 FHTGPLSVLMMSVKNNTQVLINCRNNQKLLGRVRAFDRHCNMVLDNVWEMWTELPKTGKGK 321
            F  GPLSVL  +VKN+ QVLINCRNN+KLL RV+AFDRH NMVL+NV EMWTE  +T  GK
Sbjct:   25 FSAGPLSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTEKKRTASGK 85          
BLAST of CN184426 vs. ExPASy Swiss-Prot
Match: SMD2_YEAST (Small nuclear ribonucleoprotein Sm D2 OS=Saccharomyces cerevisiae GN=SMD2 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 8.973e-12
Identity = 32/59 (54.24%), Postives = 44/59 (74.58%), Query Frame = 1
Query:  139 FHTGPLSVLMMSVKNNTQVLINCRNNQKLLGRVRAFDRHCNMVLDNVWEMWTELPKTGK 315
            F  GP+S++  ++   T V+I+ RNN K++ RV+AFDRHCNMVL+NV E+WTE  K GK
Sbjct:   26 FKHGPMSLINDAMVTRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE--KKGK 82          
The following BLAST results are available for this feature:
BLAST of CN184426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SMD2_DROME1.092e-2586.89Probable small nuclear ribonucleoprotein Sm D2 OS=... [more]
SMD2_MOUSE3.176e-2585.25Small nuclear ribonucleoprotein Sm D2 OS=Mus muscu... [more]
SMD2_HUMAN3.176e-2585.25Small nuclear ribonucleoprotein Sm D2 OS=Homo sapi... [more]
SMD2_BOVIN3.176e-2585.25Small nuclear ribonucleoprotein Sm D2 OS=Bos tauru... [more]
SMD2_CAEEL5.991e-2481.97Probable small nuclear ribonucleoprotein Sm D2 OS=... [more]
SMD2_DICDI5.607e-2282.76Probable small nuclear ribonucleoprotein Sm D2 OS=... [more]
SMD2_SCHPO1.293e-1870.49Probable small nuclear ribonucleoprotein Sm D2 OS=... [more]
SMD2_YEAST8.973e-1254.24Small nuclear ribonucleoprotein Sm D2 OS=Saccharom... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0005H20_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005H20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184426 ID=CN184426; Name=CN184426; organism=Citrus sinensis; type=EST; length=321bp
CTTTTTCTCTGCCCAAGATCCCCTTCACCCTCTCGCTCTCTCTATAGACT
ATACCCTGTCGTCGTTTGGGAGACTCGAGTGAAGATGAGTAGAGCAATGG
ATGAGGATACCACTGGTGGAAAGACTGAGGAAGAGGAATTCCACACTGGG
CCACTTTCTGTTCTGATGATGAGTGTTAAAAATAACACTCAGGTGCTAAT
CAACTGCCGGAACAACCAGAAGCTTCTTGGCCGTGTGAGGGCATTTGATC
GACACTGCAACATGGTCCTTGATAATGTCTGGGAGATGTGGACTGAGTTG
CCCAAGACTGGGAAAGGAAAG
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