CN184425
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN184425 vs. ExPASy Swiss-Prot
Match: SMD2_DROME (Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster GN=snRNP2 PE=1 SV=1) HSP 1 Score: 151.754 bits (382), Expect = 1.738e-36 Identity = 75/94 (79.79%), Postives = 80/94 (85.11%), Query Frame = -3 Query: 224 EEEFNTGPPFCSDDEC*KITLEVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 505 EEEFNTGP K +VLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTELP+TGKGKKK PVNKDRFISKMFLRGDSVI+VLRNP Sbjct: 20 EEEFNTGPLSVLTQSV-KNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLRNP 112
BLAST of CN184425 vs. ExPASy Swiss-Prot
Match: SMD2_MOUSE (Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus GN=Snrpd2 PE=2 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 6.606e-36 Identity = 73/94 (77.66%), Postives = 81/94 (86.17%), Query Frame = -3 Query: 224 EEEFNTGPPFCSDDEC*KITLEVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 505 EEEFNTGP K +VLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP Sbjct: 21 EEEFNTGPLSVLTQSV-KNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
BLAST of CN184425 vs. ExPASy Swiss-Prot
Match: SMD2_HUMAN (Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens GN=SNRPD2 PE=1 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 6.606e-36 Identity = 73/94 (77.66%), Postives = 81/94 (86.17%), Query Frame = -3 Query: 224 EEEFNTGPPFCSDDEC*KITLEVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 505 EEEFNTGP K +VLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP Sbjct: 21 EEEFNTGPLSVLTQSV-KNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
BLAST of CN184425 vs. ExPASy Swiss-Prot
Match: SMD2_BOVIN (Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus GN=SNRPD2 PE=3 SV=1) HSP 1 Score: 149.828 bits (377), Expect = 6.606e-36 Identity = 73/94 (77.66%), Postives = 81/94 (86.17%), Query Frame = -3 Query: 224 EEEFNTGPPFCSDDEC*KITLEVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 505 EEEFNTGP K +VLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP Sbjct: 21 EEEFNTGPLSVLTQSV-KNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
BLAST of CN184425 vs. ExPASy Swiss-Prot
Match: SMD2_CAEEL (Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis elegans GN=snr-4 PE=1 SV=1) HSP 1 Score: 141.354 bits (355), Expect = 2.349e-33 Identity = 70/94 (74.47%), Postives = 79/94 (84.04%), Query Frame = -3 Query: 224 EEEFNTGPPFCSDDEC*KITLEVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 505 +EEFN GP + K +VLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PKTGKGKKKA V KDRFISKMFLRGDSVI+V++NP Sbjct: 21 DEEFNVGPLSILTNSV-KNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNP 113
BLAST of CN184425 vs. ExPASy Swiss-Prot
Match: SMD2_DICDI (Probable small nuclear ribonucleoprotein Sm D2 OS=Dictyostelium discoideum GN=snrpd2 PE=3 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 9.871e-32 Identity = 63/73 (86.30%), Postives = 70/73 (95.89%), Query Frame = -3 Query: 224 EVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 442 +VLIN RNNKKLLGRVRAFDRHCNMVLENV+E+WTE+PKT KGKKKA P+NKDRFISKMFLRGDSVI+VL+NP Sbjct: 32 QVLINVRNNKKLLGRVRAFDRHCNMVLENVKEIWTEVPKTAKGKKKAKPINKDRFISKMFLRGDSVILVLKNP 104
BLAST of CN184425 vs. ExPASy Swiss-Prot
Match: SMD2_SCHPO (Probable small nuclear ribonucleoprotein Sm D2 OS=Schizosaccharomyces pombe GN=smd2 PE=2 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 2.604e-24 Identity = 59/94 (62.77%), Postives = 69/94 (73.40%), Query Frame = -3 Query: 224 EEEFNTGPPFCSDDEC*KITLEVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 505 E EF+ GP + K +VLINCRNNKKLL RV+AFDRH NMVLENV+EMWTE +T G KK +NKDRFISKMFLRGD V++V+R P Sbjct: 22 EYEFSAGP-LSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTEKKRTASG-KKGKAINKDRFISKMFLRGDGVVLVVRIP 113
BLAST of CN184425 vs. ExPASy Swiss-Prot
Match: SMD2_YEAST (Small nuclear ribonucleoprotein Sm D2 OS=Saccharomyces cerevisiae GN=SMD2 PE=1 SV=2) HSP 1 Score: 95.5153 bits (236), Expect = 1.478e-19 Identity = 51/94 (54.26%), Postives = 65/94 (69.15%), Query Frame = -3 Query: 224 EEEFNTGPPFCSDDEC*KITLEVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 505 E EF GP +D T V+I+ RNN K++ RV+AFDRHCNMVLENV+E+WTE KK +N++RFISK+FLRGDSVI+VL+ P Sbjct: 23 EFEFKHGPMSLINDAMVTRT-PVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE-------KKGKNVINRERFISKLFLRGDSVIVVLKTP 108 The following BLAST results are available for this feature:
BLAST of CN184425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CN184425 ID=CN184425; Name=CN184425; organism=Citrus sinensis; type=EST; length=507bpback to top |