CN184425

Overview
NameCN184425
Unique NameCN184425
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length507
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184425 vs. ExPASy Swiss-Prot
Match: SMD2_DROME (Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster GN=snRNP2 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.738e-36
Identity = 75/94 (79.79%), Postives = 80/94 (85.11%), Query Frame = -3
Query:  224 EEEFNTGPPFCSDDEC*KITLEVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 505
            EEEFNTGP         K   +VLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTELP+TGKGKKK  PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct:   20 EEEFNTGPLSVLTQSV-KNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLRNP 112          
BLAST of CN184425 vs. ExPASy Swiss-Prot
Match: SMD2_MOUSE (Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus GN=Snrpd2 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 6.606e-36
Identity = 73/94 (77.66%), Postives = 81/94 (86.17%), Query Frame = -3
Query:  224 EEEFNTGPPFCSDDEC*KITLEVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 505
            EEEFNTGP         K   +VLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct:   21 EEEFNTGPLSVLTQSV-KNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113          
BLAST of CN184425 vs. ExPASy Swiss-Prot
Match: SMD2_HUMAN (Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens GN=SNRPD2 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 6.606e-36
Identity = 73/94 (77.66%), Postives = 81/94 (86.17%), Query Frame = -3
Query:  224 EEEFNTGPPFCSDDEC*KITLEVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 505
            EEEFNTGP         K   +VLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct:   21 EEEFNTGPLSVLTQSV-KNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113          
BLAST of CN184425 vs. ExPASy Swiss-Prot
Match: SMD2_BOVIN (Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus GN=SNRPD2 PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 6.606e-36
Identity = 73/94 (77.66%), Postives = 81/94 (86.17%), Query Frame = -3
Query:  224 EEEFNTGPPFCSDDEC*KITLEVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 505
            EEEFNTGP         K   +VLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct:   21 EEEFNTGPLSVLTQSV-KNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113          
BLAST of CN184425 vs. ExPASy Swiss-Prot
Match: SMD2_CAEEL (Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis elegans GN=snr-4 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.349e-33
Identity = 70/94 (74.47%), Postives = 79/94 (84.04%), Query Frame = -3
Query:  224 EEEFNTGPPFCSDDEC*KITLEVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 505
            +EEFN GP     +   K   +VLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PKTGKGKKKA  V KDRFISKMFLRGDSVI+V++NP
Sbjct:   21 DEEFNVGPLSILTNSV-KNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNP 113          
BLAST of CN184425 vs. ExPASy Swiss-Prot
Match: SMD2_DICDI (Probable small nuclear ribonucleoprotein Sm D2 OS=Dictyostelium discoideum GN=snrpd2 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 9.871e-32
Identity = 63/73 (86.30%), Postives = 70/73 (95.89%), Query Frame = -3
Query:  224 EVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 442
            +VLIN RNNKKLLGRVRAFDRHCNMVLENV+E+WTE+PKT KGKKKA P+NKDRFISKMFLRGDSVI+VL+NP
Sbjct:   32 QVLINVRNNKKLLGRVRAFDRHCNMVLENVKEIWTEVPKTAKGKKKAKPINKDRFISKMFLRGDSVILVLKNP 104          
BLAST of CN184425 vs. ExPASy Swiss-Prot
Match: SMD2_SCHPO (Probable small nuclear ribonucleoprotein Sm D2 OS=Schizosaccharomyces pombe GN=smd2 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.604e-24
Identity = 59/94 (62.77%), Postives = 69/94 (73.40%), Query Frame = -3
Query:  224 EEEFNTGPPFCSDDEC*KITLEVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 505
            E EF+ GP      +  K   +VLINCRNNKKLL RV+AFDRH NMVLENV+EMWTE  +T  G KK   +NKDRFISKMFLRGD V++V+R P
Sbjct:   22 EYEFSAGP-LSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTEKKRTASG-KKGKAINKDRFISKMFLRGDGVVLVVRIP 113          
BLAST of CN184425 vs. ExPASy Swiss-Prot
Match: SMD2_YEAST (Small nuclear ribonucleoprotein Sm D2 OS=Saccharomyces cerevisiae GN=SMD2 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 1.478e-19
Identity = 51/94 (54.26%), Postives = 65/94 (69.15%), Query Frame = -3
Query:  224 EEEFNTGPPFCSDDEC*KITLEVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 505
            E EF  GP    +D     T  V+I+ RNN K++ RV+AFDRHCNMVLENV+E+WTE       KK    +N++RFISK+FLRGDSVI+VL+ P
Sbjct:   23 EFEFKHGPMSLINDAMVTRT-PVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE-------KKGKNVINRERFISKLFLRGDSVIVVLKTP 108          
The following BLAST results are available for this feature:
BLAST of CN184425 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SMD2_DROME1.738e-3679.79Probable small nuclear ribonucleoprotein Sm D2 OS=... [more]
SMD2_MOUSE6.606e-3677.66Small nuclear ribonucleoprotein Sm D2 OS=Mus muscu... [more]
SMD2_HUMAN6.606e-3677.66Small nuclear ribonucleoprotein Sm D2 OS=Homo sapi... [more]
SMD2_BOVIN6.606e-3677.66Small nuclear ribonucleoprotein Sm D2 OS=Bos tauru... [more]
SMD2_CAEEL2.349e-3374.47Probable small nuclear ribonucleoprotein Sm D2 OS=... [more]
SMD2_DICDI9.871e-3286.30Probable small nuclear ribonucleoprotein Sm D2 OS=... [more]
SMD2_SCHPO2.604e-2462.77Probable small nuclear ribonucleoprotein Sm D2 OS=... [more]
SMD2_YEAST1.478e-1954.26Small nuclear ribonucleoprotein Sm D2 OS=Saccharom... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0005H20_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005H20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184425 ID=CN184425; Name=CN184425; organism=Citrus sinensis; type=EST; length=507bp
TGAACATCATATATCCCTTGGTCAGGTAATATAATCACCTGACTACAAAA
ATCAACGGGCTAGTGGAGACAAATAAAAGTCACTGACTTTATAATAAACT
TTCAGACCAAACATGTTAATCCCTAAAAATGTAAATGGATCTGTCACGCA
ACATAGTCCACAAATATCAAGACAACCGTTCTAACATCATCGAGAATGAT
TTCTAAAGACCGCTATATCACTTGGGATTTCTAAGGACAATGATTACAGA
GTCCCCTCGAAGGAACATCTTGCTGATGAATCTGTCTTTGTTGACCGGAA
GAGCTTTCTTCTTTCCTTTCCCAGTCTTGGGCAACTCAGTCCACATCTCC
CTGACATTTTCAAGGACCATGTTGCAGTGTCGATCAAATGCCCTCACACG
GCCAAGAAGCTTCTTGTTGTTCCGGCAGTTGATTAGCACCTCGAGTGTTA
TTTTTTAACACTCATCATCAGAACAGAAAGGGGGCCCAGTGTTGAATTCC
TCTTCCT
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