EY666407

Overview
NameEY666407
Unique NameEY666407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY666407 vs. ExPASy Swiss-Prot
Match: GLNA4_PHAVU (Glutamine synthetase leaf isozyme, chloroplastic OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 313.153 bits (801), Expect = 1.294e-84
Identity = 169/222 (76.13%), Postives = 179/222 (80.63%), Query Frame = 3
Query:  144 MAQILAPSMQWQMRMPKYSNIAVYENQKNCGFSLLMKQNKKGTNRSSAKFRVLALKSEDSTVNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMPSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKTP*GLAEIFSNSKVSAEVPWFGIEQEYTF--TLTKWEMGSWGGPVGTYPGSPRAP 803
            MAQILAPS QWQMR  K S  A      N   SLLMKQNKK    SSAKFRVLA+KS+ ST+NRLE LLNLDITP+TDKIIAEYIWIGGTGID+ SKS+TISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICD YTPAGEPIPTNK     AE+FSN +V AEVPWFGIEQEYT   T   W +G W  PVG YPG P+ P
Sbjct:    1 MAQILAPSTQWQMRFTKSSRHAS-PITSNTWSSLLMKQNKK---TSSAKFRVLAVKSDGSTINRLEGLLNLDITPFTDKIIAEYIWIGGTGIDVRSKSRTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDAYTPAGEPIPTNKRH-RAAEVFSNPRVIAEVPWFGIEQEYTLLQTNVNWPLG-W--PVGGYPG-PQGP 213          
BLAST of EY666407 vs. ExPASy Swiss-Prot
Match: GLNA2_DAUCA (Glutamine synthetase, chloroplastic OS=Daucus carota GN=GLN2 PE=2 SV=1)

HSP 1 Score: 311.997 bits (798), Expect = 2.884e-84
Identity = 158/219 (72.15%), Postives = 173/219 (79.00%), Query Frame = 3
Query:  144 MAQILAPSMQWQMRMPKYSNIAVYENQKNCGFSLLMKQNKKGTNRSSAKFRVLALKSEDSTVNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMPSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKTP*GLAEIFSNSKVSAEVPWFGIEQEYTFTLTK------WEMGSWGGPVGTY 782
            MAQILAPS+QWQMR  K S        K  G SL +KQNKK   RSS K+R LA+KSED T+NR+EDLLNLD+TPYTDKIIAEYIWIGGTGID+ SKS+TISKPVEHPSELPKWNYDGSSTGQAPG+DSEVILYPQAIFKDPFRGGNNILVICDTYTP GEPIPTNK     A+IFS++KV  EVPWFGIEQEYT           W +G + GP G Y
Sbjct:    1 MAQILAPSVQWQMRFTKNSTEVSSMTSKMWG-SLFLKQNKKAPARSSTKYRALAVKSEDGTINRMEDLLNLDVTPYTDKIIAEYIWIGGTGIDVRSKSRTISKPVEHPSELPKWNYDGSSTGQAPGDDSEVILYPQAIFKDPFRGGNNILVICDTYTPQGEPIPTNKRH-KAAQIFSDAKVLGEVPWFGIEQEYTLMQQDVNWPLGWNVGGYPGPQGPY 217          
BLAST of EY666407 vs. ExPASy Swiss-Prot
Match: GLNA2_PEA (Glutamine synthetase leaf isozyme, chloroplastic OS=Pisum sativum GN=GS2 PE=2 SV=2)

HSP 1 Score: 305.449 bits (781), Expect = 2.699e-82
Identity = 161/222 (72.52%), Postives = 178/222 (80.18%), Query Frame = 3
Query:  144 MAQILAPSMQWQMRMPKYSNIAVYENQKNCGFSLLMKQNKKGTNRSSAKFRVLALKSEDSTVNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMPSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKTP*GLAEIFSNSKVSAEVPWFGIEQEYTF--TLTKWEMGSWGGPVGTYPGSPRAP 803
            MAQILAPS QWQMR+ K S  A     K    SL+MKQ KK  +  SAKFRV+A+ SE+ T+NR+EDLLNLDITP+TD IIAEYIWIGGTGID+ SKS+TISKPV HPSE+PKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILV+CD YTPAGEPIPTNK     AEIFSN KV AE+PW+GIEQEYT   T  KW +G W  PVG YPG P+ P
Sbjct:    1 MAQILAPSTQWQMRITKTSPCATPITSKMWS-SLVMKQTKKVAH--SAKFRVMAVNSENGTINRVEDLLNLDITPFTDSIIAEYIWIGGTGIDVRSKSRTISKPVSHPSEVPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVVCDAYTPAGEPIPTNKRH-RAAEIFSNPKVEAEIPWYGIEQEYTLLQTNVKWPLG-W--PVGGYPG-PQGP 214          
BLAST of EY666407 vs. ExPASy Swiss-Prot
Match: GLNA2_MEDSA (Glutamine synthetase leaf isozyme, chloroplastic OS=Medicago sativa GN=GS2 PE=2 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 9.600e-80
Identity = 161/222 (72.52%), Postives = 177/222 (79.73%), Query Frame = 3
Query:  144 MAQILAPSMQWQMRMPKYSNIAVYENQKNCGFSLLMKQNKKGTNRSSAKFRVLALKSEDSTVNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMPSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKTP*GLAEIFSNSKVSAEVPWFGIEQEYTFTLT--KWEMGSWGGPVGTYPGSPRAP 803
            MAQILAPS+Q Q R+ K S +A   + K    SL+MKQNKK     SAKFRV+A+ S   T+NR+EDLLNLDITP+TD IIAEYIWIGGTGID+ SKS+TISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICD YTP GEPIPTNK     AEIFSN KV AE+PW+GIEQEYT   T  KW +G W  PVG YPG P+ P
Sbjct:    1 MAQILAPSIQCQTRITKTSPLATPISSKMWS-SLVMKQNKKVAR--SAKFRVMAINS--GTINRVEDLLNLDITPFTDSIIAEYIWIGGTGIDVRSKSRTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDAYTPQGEPIPTNKRH-KAAEIFSNPKVEAEIPWYGIEQEYTLLQTDVKWPLG-W--PVGGYPG-PQGP 212          
BLAST of EY666407 vs. ExPASy Swiss-Prot
Match: GLNA2_ARATH (Glutamine synthetase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=GLN2 PE=1 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 3.358e-77
Identity = 151/222 (68.02%), Postives = 175/222 (78.83%), Query Frame = 3
Query:  144 MAQILAPSMQWQMRMPKYSNIAVYENQKNCGFSLLMKQNKKGTNRSSAKFRVLALKSEDSTVNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMPSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKTP*GLAEIFSNSKVSAEVPWFGIEQEYTFTL--TKWEMGSWGGPVGTYPGSPRAP 803
            MAQILA S   QMR+PK+S++    +      S+++KQ K+  N+    FRVLAL+S++STVNR+E LLNLD  PY+D+IIAEYIWIGG+GID+ SKS+TI KPVE PSELPKWNYDGSSTGQAPGEDSEVILYPQAIF+DPFRGGNNILVICDT+TPAGEPIPTNK     AEIFSN KVS EVPWFGIEQEYT      KW +G W  PVG +PG P+ P
Sbjct:    1 MAQILAASPTCQMRVPKHSSVIA--SSSKLWSSVVLKQKKQSNNKVRG-FRVLALQSDNSTVNRVETLLNLDTKPYSDRIIAEYIWIGGSGIDLRSKSRTIEKPVEDPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFRDPFRGGNNILVICDTWTPAGEPIPTNKRA-KAAEIFSNKKVSGEVPWFGIEQEYTLLQQNVKWPLG-W--PVGAFPG-PQGP 214          

HSP 2 Score: 23.483 bits (49), Expect = 3.358e-77
Identity = 11/19 (57.89%), Postives = 13/19 (68.42%), Query Frame = 2
Query:  791 PQGPYYWGNLGLIKTLGRE 847
            PQGPYY G +G  K  GR+
Sbjct:  211 PQGPYYCG-VGADKIWGRD 228          
BLAST of EY666407 vs. ExPASy Swiss-Prot
Match: GLNAC_BRANA (Glutamine synthetase, chloroplastic OS=Brassica napus GN=GLN2 PE=2 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 5.224e-75
Identity = 146/222 (65.77%), Postives = 174/222 (78.38%), Query Frame = 3
Query:  144 MAQILAPSMQWQMRMPKYSNIAVYENQKNCGFSLLMKQNKKGTNRSSAKFRVLALKSEDSTVNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMPSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKTP*GLAEIFSNSKVSAEVPWFGIEQEYTFTL--TKWEMGSWGGPVGTYPGSPRAP 803
            MAQILA S   QMR+ K S+IA          S+++KQ K+ +++  + F+V+AL+S++ST+NR+E LLNLD  P+TD+IIAEYIWIGG+GID+ SKS+T+ KPVE PSELPKWNYDGSSTGQAPGEDSEVILYPQAIF+DPFRGGNNILVICDTYTPAGEPIPTNK     AEIFSN KV+ E+PWFGIEQEYT       W +G W  PVG YPG P+ P
Sbjct:    1 MAQILAASPTCQMRLTKPSSIA----SSKLWNSVVLKQKKQSSSKVRS-FKVMALQSDNSTINRVESLLNLDTKPFTDRIIAEYIWIGGSGIDLRSKSRTLEKPVEDPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFRDPFRGGNNILVICDTYTPAGEPIPTNKRA-RAAEIFSNKKVNEEIPWFGIEQEYTLLQPNVNWPLG-W--PVGAYPG-PQGP 212          

HSP 2 Score: 24.2534 bits (51), Expect = 5.224e-75
Identity = 11/19 (57.89%), Postives = 14/19 (73.68%), Query Frame = 2
Query:  791 PQGPYYWGNLGLIKTLGRE 847
            PQGPYY G +G  K+ GR+
Sbjct:  209 PQGPYYCG-VGAEKSWGRD 226          
BLAST of EY666407 vs. ExPASy Swiss-Prot
Match: GLNA2_ORYSJ (Glutamine synthetase, chloroplastic OS=Oryza sativa subsp. japonica GN=GLN2 PE=1 SV=1)

HSP 1 Score: 254.603 bits (649), Expect = 5.464e-67
Identity = 136/223 (60.99%), Postives = 163/223 (73.09%), Query Frame = 3
Query:  144 MAQILAPSMQWQMRMPKYSNIAVYENQKNCGFSLLMKQNKKGTNRSSAKFRVLALKSEDS-TVNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMPSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKTP*GLAEIFSNSKVSAEVPWFGIEQEYTFTL--TKWEMGSWGGPVGTYPGSPRAP 803
            MAQ + P+MQ Q+   +    A         + +      + T R ++ FRV+A+ +E +  V R+E LLN+D TP+TDKIIAEYIW+GGTGID+ SKS+TISKPVE PSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILV+CDTYTPAGEPIPTNK     A++FS+ KV ++VPWFGIEQEYT       W +G W  PVG YPG P+ P
Sbjct:    1 MAQAVVPAMQCQVGAVRARPAAAAAAAGGRVWGV------RRTGRGTSGFRVMAVSTETTGVVTRMEQLLNMDTTPFTDKIIAEYIWVGGTGIDLRSKSRTISKPVEDPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVMCDTYTPAGEPIPTNKRN-RAAQVFSDPKVVSQVPWFGIEQEYTLLQRDVNWPLG-W--PVGGYPG-PQGP 212          
BLAST of EY666407 vs. ExPASy Swiss-Prot
Match: GLNA2_HORVU (Glutamine synthetase leaf isozyme, chloroplastic OS=Hordeum vulgare PE=2 SV=2)

HSP 1 Score: 246.899 bits (629), Expect = 1.139e-64
Identity = 125/179 (69.83%), Postives = 147/179 (82.12%), Query Frame = 3
Query:  276 RSSAKFRVLALKSEDS-TVNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMPSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKTP*GLAEIFSNSKVSAEVPWFGIEQEYTFTL--TKWEMGSWGGPVGTYPGSPRAP 803
            R+++ F+VLAL  E +  + R++ LL++D TP+TDKIIAEYIW+GG+GID+ SKS+TISKPVE PSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTP GEPIPTNK     A+IFS+ KV+++VPWFGIEQEYT       W +G W  PVG YPG P+ P
Sbjct:   45 RATSGFKVLALGPETTGVIQRMQQLLDMDTTPFTDKIIAEYIWVGGSGIDLRSKSRTISKPVEDPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPQGEPIPTNKRH-MAAQIFSDPKVTSQVPWFGIEQEYTLMQRDVNWPLG-W--PVGGYPG-PQGP 218          
BLAST of EY666407 vs. ExPASy Swiss-Prot
Match: GLNAC_MAIZE (Glutamine synthetase, chloroplastic OS=Zea mays GN=GLN2 PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 2.538e-64
Identity = 131/223 (58.74%), Postives = 159/223 (71.30%), Query Frame = 3
Query:  144 MAQILAPSMQWQMRMPKYSNIAVYENQKNCGFSLLMKQNKKGTNRSSAKFRVLALKSEDS-TVNRLEDLLNLDITPYTDKIIAEYIWIGGTGIDMPSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKTP*GLAEIFSNSKVSAEVPWFGIEQEYTFTL--TKWEMGSWGGPVGTYPGSPRAP 803
            MAQ + P+MQ ++ +           +   G      + + G   +S  F+V+A+ +  +  V RLE LLN+D TPYTDK+IAEYIW+GG+GID+ SKS+TISKPVE PSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNN+LVICDTYTP GEP+PTNK     A+IFS+ KV  +VPWFGIEQEYT       W +G W  PVG +PG P+ P
Sbjct:    1 MAQAVVPAMQCRVGV-----------KAAAGRVWSAGRTRTGRGGASPGFKVMAVSTGSTGVVPRLEQLLNMDTTPYTDKVIAEYIWVGGSGIDIRSKSRTISKPVEDPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNVLVICDTYTPQGEPLPTNKRH-RAAQIFSDPKVGEQVPWFGIEQEYTLLQKDVNWPLG-W--PVGGFPG-PQGP 207          
BLAST of EY666407 vs. ExPASy Swiss-Prot
Match: GLN11_ARATH (Glutamine synthetase cytosolic isozyme 1-1 OS=Arabidopsis thaliana GN=GLN1-1 PE=1 SV=2)

HSP 1 Score: 219.935 bits (559), Expect = 1.025e-57
Identity = 108/158 (68.35%), Postives = 128/158 (81.01%), Query Frame = 3
Query:  336 LEDLLNLDITPYTDKIIAEYIWIGGTGIDMPSKSKTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVICDTYTPAGEPIPTNKTP*GLAEIFSNSKVSAEVPWFGIEQEYTFTL--TKWEMGSWGGPVGTYPGSPRAP 803
            + DL+NL+++  TDKIIAEYIW+GG+G+DM SK++T+  PV  PS+LPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFR GNNILV+CD YTPAGEPIPTNK     A++FSN  V+AEVPW+GIEQEYT      KW +G W  P+G YPG P+ P
Sbjct:    4 VSDLINLNLSDSTDKIIAEYIWVGGSGMDMRSKARTLPGPVTDPSQLPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRH-AAAKVFSNPDVAAEVPWYGIEQEYTLLQKDVKWPVG-W--PIGGYPG-PQGP 156          

HSP 2 Score: 25.409 bits (54), Expect = 1.025e-57
Identity = 11/19 (57.89%), Postives = 14/19 (73.68%), Query Frame = 2
Query:  791 PQGPYYWGNLGLIKTLGRE 847
            PQGPYY G +G  K+ GR+
Sbjct:  153 PQGPYYCG-IGADKSFGRD 170          
The following BLAST results are available for this feature:
BLAST of EY666407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
GLNA4_PHAVU1.294e-8476.13Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA2_DAUCA2.884e-8472.15Glutamine synthetase, chloroplastic OS=Daucus caro... [more]
GLNA2_PEA2.699e-8272.52Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA2_MEDSA9.600e-8072.52Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNA2_ARATH3.358e-7768.02Glutamine synthetase, chloroplastic/mitochondrial ... [more]
GLNAC_BRANA5.224e-7565.77Glutamine synthetase, chloroplastic OS=Brassica na... [more]
GLNA2_ORYSJ5.464e-6760.99Glutamine synthetase, chloroplastic OS=Oryza sativ... [more]
GLNA2_HORVU1.139e-6469.83Glutamine synthetase leaf isozyme, chloroplastic O... [more]
GLNAC_MAIZE2.538e-6458.74Glutamine synthetase, chloroplastic OS=Zea mays GN... [more]
GLN11_ARATH1.025e-5768.35Glutamine synthetase cytosolic isozyme 1-1 OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-017-E08-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666407 ID=EY666407; Name=EY666407; organism=Citrus sinensis; type=EST; length=884bp
GGCGCGCAGTACGGTCGGGATTCCGGGTCGACCCACGCGTCCGACCATTT
GAGTCTTCTCTTCTTTCTTTCTAATCGGACCCTGCAGCAGATCAGCATTT
TGGTTTTACTCTTCAACCAATTTTCAGGGAGGAGTAGGTGAAAATGGCGC
AGATTTTGGCACCTTCTATGCAATGGCAGATGAGGATGCCTAAGTACTCA
AACATTGCAGTCTATGAGAACCAAAAAAATTGTGGATTCTCTCTGTTGAT
GAAGCAGAACAAGAAAGGAACAAATAGGAGTTCTGCCAAGTTTAGAGTGC
TTGCTTTGAAATCTGAAGACAGCACTGTCAATAGGCTAGAGGATCTACTC
AATTTGGACATCACTCCATATACTGACAAAATCATTGCCGAATATATTTG
GATTGGAGGTACTGGGATTGATATGCCTAGCAAGTCAAAGACCATTTCAA
AGCCTGTTGAGCATCCATCTGAGCTTCCCAAGTGGAATTATGATGGATCA
AGTACTGGACAGGCACCTGGTGAAGATAGTGAAGTAATTTTATACCCTCA
AGCAATTTTTAAGGACCCCTTCCGTGGAGGAAACAACATCTTGGTAATTT
GTGATACCTACACACCAGCAGGCGAGCCCATCCCTACAAACAAAACGCCA
TAGGGGCTGGCTGAAATTTTCAGTAACTCCAAAGTGTCTGCTGAAGTTCC
ATGGTTTGGGATAGAGCAAGAATACACCTTTACTCTCACAAAATGGGAAA
TGGGCTCCTGGGGTGGGCCTGTTGGAACCTATCCCGGGTCCCCCAGGGCC
CCTATTACTGGGGAAACTTGGGGCTGATAAAAACGTTAGGCCGGGAACAT
TTGCAAATAATCCTTTAAAAGGGTTTACTTTTGA
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