CN184407

Overview
NameCN184407
Unique NameCN184407
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN184407 vs. ExPASy Swiss-Prot
Match: RPT2_ARATH (Root phototropism protein 2 OS=Arabidopsis thaliana GN=RPT2 PE=1 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 1.925e-44
Identity = 97/158 (61.39%), Postives = 113/158 (71.52%), Query Frame = -3 
Query:  237 REKICSSMAPLKLSYEARVHASQNKRLPVQIVLHALYYDQLKLRSGLDNDRS-----TPDAAATRNQLQADVLLIKENEALRSELTRMKLYISDVQKGNN--QAXXXXXXXXXXXXXXXXTFFSSMSKTFGKLNPFKHGSKDTSNIDDDVAAMDRTKP 689
            REK+CSSM PLKLSY+AR+HASQNKRLPV IVLHALYYDQLKLRSG+           P+A  TR+QLQAD  L KENEALRSEL +MK+Y+SD+QK  N   A                TFFSS+SK  GKLNPFK+GSKDTS+ID+D+  +D TKP
Sbjct:  428 REKVCSSMDPLKLSYDARLHASQNKRLPVNIVLHALYYDQLKLRSGVAEQEERAVVVLPEALKTRSQLQADTTLAKENEALRSELMKMKMYVSDMQKNKNGAGASSSNSSSLVSSKKSKHTFFSSVSKKLGKLNPFKNGSKDTSHIDEDLGGVDITKP 585
The following BLAST results are available for this feature:
BLAST of CN184407 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RPT2_ARATH1.925e-4461.39Root phototropism protein 2 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0005H06_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184407 ID=CN184407; Name=CN184407; organism=Citrus sinensis; type=EST; length=691bp
GAGGATTTAACAAAAGTTTAGTTTTGATTTATTCTCTCATACATACAGTA
CAATCATAAATTTAACATTTAGTTACACAAATTCATCGACCCCAAAACAA
AACCAAAAAGAAAAAAGAAAAAATAATCATAACACACAAATCAGAAAACA
ATTAAGTAGATCATGATCCCCGGAGTATAAAGAGTAACATCTCTTATTAT
AACACTTACTTAAGAGATGGAGAACCTTCTCCTTCTGGGCTTGGTACGAT
CCATAGCAGCAACGTCATCATCAATATTAGAAGTATCCTTAGACCCATGC
TTAAAGGGATTCAATTTGCCAAATGTCTTCGACATGGATGAGAAGAAAGT
GTGCTTTTTATGCCCACTAGTACCACTCTTACTAGAGCTACCTGTCCCTG
CTTGATTATTACCTTTCTGCACATCCGAGATATAAAGCTTCATCCTCGTC
AGCTCTGACCTCAATGCTTCGTTTTCTTTAATCAGCAATACGTCTGCCTG
CAATTGATTCCTTGTTGCTGCGGCATCTGGCGTGCTCCGATCGTTGTCCA
GTCCACTTCTTAGCTTTAGCTGGTCGTAATACAAGGCATGCAATACAATC
TGCACTGGCAATCGCTTGTTCTGTGATGCGTGTACTCGAGCTTCGTAAGA
TAGTTTTAGTGGGGCCATTGAACTGCAGATTTTCTCCCGCT
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