CN184405

Overview
NameCN184405
Unique NameCN184405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length454
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN184405 vs. ExPASy Swiss-Prot
Match: RH47A_ORYSJ (DEAD-box ATP-dependent RNA helicase 47A OS=Oryza sativa subsp. japonica GN=Os02g0636300 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 5.169e-33
Identity = 69/97 (71.13%), Postives = 80/97 (82.47%), Query Frame = -2 
Query:  151 EKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXTVVSICEEPEVFVVKKMQKQLAVPIQACEFTEGRLVIGKEEE 441
            +KFK+GE RVLVTNELSARGLDV ECDLV+NLDLPTDS HYAHRA          TVV+ICEE E FVV+KM+KQLAVPI+ CEFTEG+L++ KEE+
Sbjct:  475 KKFKDGEFRVLVTNELSARGLDVPECDLVINLDLPTDSTHYAHRAGRTGRLGRKGTVVTICEETETFVVRKMRKQLAVPIKPCEFTEGKLLVHKEED 571
[Close]
BLAST of CN184405 vs. ExPASy Swiss-Prot
Match: RH47B_ORYSJ (DEAD-box ATP-dependent RNA helicase 47B OS=Oryza sativa subsp. japonica GN=Os03g0219700 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.964e-32
Identity = 68/97 (70.10%), Postives = 79/97 (81.44%), Query Frame = -2 
Query:  151 EKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXTVVSICEEPEVFVVKKMQKQLAVPIQACEFTEGRLVIGKEEE 441
            +KFK+GE RVLVTNELSARGLDV ECDLV+NLDLPTDS HYAHRA          TVV+ICEE E FVV+KM+KQLAVPI+ CEFTEG+L++  EE+
Sbjct:  475 KKFKDGEFRVLVTNELSARGLDVPECDLVINLDLPTDSTHYAHRAGRTGRLGRKGTVVTICEETETFVVRKMRKQLAVPIKPCEFTEGKLLVHNEED 571
[Close]
BLAST of CN184405 vs. ExPASy Swiss-Prot
Match: RH47_ARATH (DEAD-box ATP-dependent RNA helicase 47 OS=Arabidopsis thaliana GN=RH47 PE=2 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 6.319e-31
Identity = 62/97 (63.92%), Postives = 79/97 (81.44%), Query Frame = -2 
Query:  151 EKFKNGEVRVLVTNELSARGLDVAECDLVVNLDLPTDSIHYAHRAXXXXXXXXXXTVVSICEEPEVFVVKKMQKQLAVPIQACEFTEGRLVIGKEEE 441
            +KFKNGE++VLVTNELSARGLDVAECDLVVNL+LPTD++HYAHRA          TVV++CEE +VF+VKKM+KQL +P   CEF +G LV+ +E++
Sbjct:  451 KKFKNGEIKVLVTNELSARGLDVAECDLVVNLELPTDAVHYAHRAGRTGRLGRKGTVVTVCEESQVFIVKKMEKQLGLPFLYCEFVDGELVVTEEDK 547
The following BLAST results are available for this feature:
BLAST of CN184405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RH47A_ORYSJ5.169e-3371.13DEAD-box ATP-dependent RNA helicase 47A OS=Oryza s... [more]
RH47B_ORYSJ1.964e-3270.10DEAD-box ATP-dependent RNA helicase 47B OS=Oryza s... [more]
RH47_ARATH6.319e-3163.92DEAD-box ATP-dependent RNA helicase 47 OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0005H03_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184405 ID=CN184405; Name=CN184405; organism=Citrus sinensis; type=EST; length=454bp
CATCCACTAATCGAAGTAGATAATAGGCCCTAATACATTATTTTAACATA
AGTTGTGGGAGACATAATCAGGGAACCTGTCTCAGTCAGCTCTTCAACAA
TAAGATGTAAAAGAAGAGACAAATTATCACCTGACAGCTTCTAATGTTTT
TTCTTCTTCTTTGCCTATAACAAGCCTGCCCTCGGTGAACTCACAAGCCT
GAATTGGAACCGCAAGCTGCTTTTGCATCTTCTTTACAACAAATACTTCT
GGTTCCTCACATATGGATACCACAGTGCCCCTCCTGCCTAGACGACCTGT
TCGACCAGCTCGATGAGCATAGTGAATTGAGTCTGTAGGTAAGTCTAAAT
TTACCACAAGATCACACTCAGCCACATCCAATCCCCTTGCTGAAAGTTCA
TTTGTCACCAGAACTCTCACCTCCCCATTCTTAAATTTCTCAAAGTTGTT
GATC
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