CN184403

Overview
NameCN184403
Unique NameCN184403
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length548
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184403 vs. ExPASy Swiss-Prot
Match: TRPE_ARATH (Anthranilate synthase component I-1, chloroplastic OS=Arabidopsis thaliana GN=ASA1 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.293e-46
Identity = 90/104 (86.54%), Postives = 96/104 (92.31%), Query Frame = -3
Query:  235 AMELIDELEVNRRGPYSGGFGGVSFTGDMDIALALRTMVFQTGTRYDTMYSYKDARKRREWVAYLQAGAGIVADSDPDDEHRECQNKAAGLARAIDLAESAFIK 546
            AMELIDELE  RRGPYSGGFGGVSFTGDMDIAL+LRT+VF T  +Y+TMYSYKDA KRREWVAYLQAGAG+VADSDP DEH ECQNKAAGLARAIDLAESAF+K
Sbjct:  491 AMELIDELEPTRRGPYSGGFGGVSFTGDMDIALSLRTIVFPTACQYNTMYSYKDANKRREWVAYLQAGAGVVADSDPQDEHCECQNKAAGLARAIDLAESAFVK 594          
BLAST of CN184403 vs. ExPASy Swiss-Prot
Match: TRPX_ARATH (Anthranilate synthase component I-2, chloroplastic OS=Arabidopsis thaliana GN=ASA2 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.867e-45
Identity = 85/104 (81.73%), Postives = 97/104 (93.27%), Query Frame = -3
Query:  235 AMELIDELEVNRRGPYSGGFGGVSFTGDMDIALALRTMVFQTGTRYDTMYSYKDARKRREWVAYLQAGAGIVADSDPDDEHRECQNKAAGLARAIDLAESAFIK 546
            AMELIDELEV RRGPYSGGFGG+SF GDMDIALALRTMVF T TRYDT+YSYK  ++RREW+A++QAGAGIVADS+PDDEHREC+NKAA LARAIDLAES+F++
Sbjct:  504 AMELIDELEVTRRGPYSGGFGGISFNGDMDIALALRTMVFPTNTRYDTLYSYKHPQRRREWIAHIQAGAGIVADSNPDDEHRECENKAAALARAIDLAESSFLE 607          
BLAST of CN184403 vs. ExPASy Swiss-Prot
Match: TRPE_THET8 (Anthranilate synthase component 1 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=trpE PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.258e-17
Identity = 47/100 (47.00%), Postives = 64/100 (64.00%), Query Frame = -3
Query:  247 AMELIDELEVNRRGPYSGGFGGVSFTGDMDIALALRTMVFQTGTRYDTMYSYKDARKRREWVAYLQAGAGIVADSDPDDEHRECQNKAAGLARAIDLAES 546
            AME+I+ELE +RRGPY G FG +++ G MD+AL LRT V   G                 W+ ++QAGAGIVADS P+ E+ EC NKA  L +A+++AE+
Sbjct:  379 AMEIIEELEPHRRGPYGGSFGYLAYDGAMDMALTLRTFVVAKG-----------------WM-HVQAGAGIVADSVPEREYEECWNKARALLKAVEMAEA 460          
BLAST of CN184403 vs. ExPASy Swiss-Prot
Match: TRPE_CLOTM (Anthranilate synthase component 1 OS=Clostridium thermocellum GN=trpE PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.037e-16
Identity = 44/98 (44.90%), Postives = 59/98 (60.20%), Query Frame = -3
Query:  253 AMELIDELEVNRRGPYSGGFGGVSFTGDMDIALALRTMVFQTGTRYDTMYSYKDARKRREWVAYLQAGAGIVADSDPDDEHRECQNKAAGLARAIDLA 546
            AME+IDELE  +RGPY G  G +SF G++D  + +RT++ + G                   AY+QAGAGIVADS P+ E+ EC NKA  L +AI+ A
Sbjct:  411 AMEIIDELETVKRGPYGGAIGYLSFNGNLDSCITIRTIILKDGK------------------AYVQAGAGIVADSVPEREYEECYNKAMALLKAIEEA 490          
BLAST of CN184403 vs. ExPASy Swiss-Prot
Match: TRPE_AQUAE (Anthranilate synthase component 1 OS=Aquifex aeolicus GN=trpE PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.907e-14
Identity = 44/101 (43.56%), Postives = 62/101 (61.39%), Query Frame = -3
Query:  244 AMELIDELEVNRRGPYSGGFGGVSFTGDMDIALALRTMVFQTGTRYDTMYSYKDARKRREWVAYLQAGAGIVADSDPDDEHRECQNKAAGLARAIDLAESA 546
            AM++I+ELE  RRG Y+G  G +SF G+MD+A+A+RT V+                  R+   ++QAGAGIVADS P+ E  E  NKA  L +AI++AE +
Sbjct:  409 AMQIIEELENERRGIYAGSVGYISFQGNMDMAIAIRTAVY------------------RDRDIFVQAGAGIVADSVPEKEWEETVNKAKALMKAIEIAEES 491          
BLAST of CN184403 vs. ExPASy Swiss-Prot
Match: TRPE_SYNY3 (Probable anthranilate synthase component 1 OS=Synechocystis sp. (strain PCC 6803) GN=trpE PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 4.959e-14
Identity = 46/95 (48.42%), Postives = 55/95 (57.89%), Query Frame = -3
Query:  262 AMELIDELEVNRRGPYSGGFGGVSFTGDMDIALALRTMVFQTGTRYDTMYSYKDARKRREWVAYLQAGAGIVADSDPDDEHRECQNKAAGLARAI 546
            AME+I+ELE  RRGPYSG +G   F G ++ A+A+RTMV Q            D   R      +Q GAGIVADSDP  E+ E  NKA GL  AI
Sbjct:  423 AMEIINELEPERRGPYSGVYGYYDFEGQLNTAIAIRTMVVQ---------EQPDGAHR----VSVQTGAGIVADSDPQKEYEETLNKARGLLEAI 504          
BLAST of CN184403 vs. ExPASy Swiss-Prot
Match: TRPE_NEIMA (Anthranilate synthase component 1 OS=Neisseria meningitidis serogroup A GN=trpE PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.214e-13
Identity = 41/104 (39.42%), Postives = 57/104 (54.81%), Query Frame = -3
Query:  235 AMELIDELEVNRRGPYSGGFGGVSFTGDMDIALALRTMVFQTGTRYDTMYSYKDARKRREWVAYLQAGAGIVADSDPDDEHRECQNKAAGLARAIDLAESAFIK 546
            AME+I+E+E ++RG Y G  G   F  DMD+A+A+RT V +  T                   Y+Q+GAG+VADSDP  E +E QNKA  + RA  + +    K
Sbjct:  406 AMEIIEEVEPSKRGIYGGAVGVWGFNNDMDLAIAIRTAVVKNNT------------------LYVQSGAGVVADSDPASEWQETQNKARAVIRAAQMVQEGLDK 491          
BLAST of CN184403 vs. ExPASy Swiss-Prot
Match: TRPE_NEIGO (Anthranilate synthase component 1 OS=Neisseria gonorrhoeae GN=trpE PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.214e-13
Identity = 40/104 (38.46%), Postives = 56/104 (53.85%), Query Frame = -3
Query:  235 AMELIDELEVNRRGPYSGGFGGVSFTGDMDIALALRTMVFQTGTRYDTMYSYKDARKRREWVAYLQAGAGIVADSDPDDEHRECQNKAAGLARAIDLAESAFIK 546
            AME+I+E+E  +RG Y G  G   F  DMD+A+A+RT V +  T                   ++Q+GAG+VADSDP  E +E QNKA  + RA  + +    K
Sbjct:  406 AMEIIEEIEPEKRGIYGGAVGVWGFNNDMDLAIAIRTAVIKNNT------------------LFIQSGAGVVADSDPTSEWQETQNKARAVVRAAQMVQEGLDK 491          
BLAST of CN184403 vs. ExPASy Swiss-Prot
Match: TRPE_NEIG1 (Anthranilate synthase component 1 OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=trpE PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.214e-13
Identity = 40/104 (38.46%), Postives = 56/104 (53.85%), Query Frame = -3
Query:  235 AMELIDELEVNRRGPYSGGFGGVSFTGDMDIALALRTMVFQTGTRYDTMYSYKDARKRREWVAYLQAGAGIVADSDPDDEHRECQNKAAGLARAIDLAESAFIK 546
            AME+I+E+E  +RG Y G  G   F  DMD+A+A+RT V +  T                   ++Q+GAG+VADSDP  E +E QNKA  + RA  + +    K
Sbjct:  406 AMEIIEEIEPEKRGIYGGAVGVWGFNNDMDLAIAIRTAVIKNNT------------------LFIQSGAGVVADSDPTSEWQETQNKARAVVRAAQMVQEGLDK 491          
BLAST of CN184403 vs. ExPASy Swiss-Prot
Match: TRPE_NEIMF (Anthranilate synthase component 1 OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=trpE PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.221e-12
Identity = 40/104 (38.46%), Postives = 56/104 (53.85%), Query Frame = -3
Query:  235 AMELIDELEVNRRGPYSGGFGGVSFTGDMDIALALRTMVFQTGTRYDTMYSYKDARKRREWVAYLQAGAGIVADSDPDDEHRECQNKAAGLARAIDLAESAFIK 546
            AME+I+E+E ++RG Y G  G   F  DMD+A+A+RT V +  T                   Y+Q+GAG+VADSDP  E +E QNKA  +  A  + +    K
Sbjct:  406 AMEIIEEVEPSKRGIYGGAVGVWGFNNDMDLAIAIRTAVVKNNT------------------LYVQSGAGVVADSDPASEWQETQNKARAVIHAAQMVQEGLDK 491          
The following BLAST results are available for this feature:
BLAST of CN184403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
TRPE_ARATH1.293e-4686.54Anthranilate synthase component I-1, chloroplastic... [more]
TRPX_ARATH1.867e-4581.73Anthranilate synthase component I-2, chloroplastic... [more]
TRPE_THET86.258e-1747.00Anthranilate synthase component 1 OS=Thermus therm... [more]
TRPE_CLOTM9.037e-1644.90Anthranilate synthase component 1 OS=Clostridium t... [more]
TRPE_AQUAE2.907e-1443.56Anthranilate synthase component 1 OS=Aquifex aeoli... [more]
TRPE_SYNY34.959e-1448.42Probable anthranilate synthase component 1 OS=Syne... [more]
TRPE_NEIMA3.214e-1339.42Anthranilate synthase component 1 OS=Neisseria men... [more]
TRPE_NEIGO3.214e-1338.46Anthranilate synthase component 1 OS=Neisseria gon... [more]
TRPE_NEIG13.214e-1338.46Anthranilate synthase component 1 OS=Neisseria gon... [more]
TRPE_NEIMF1.221e-1238.46Anthranilate synthase component 1 OS=Neisseria men... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005H02_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184403 ID=CN184403; Name=CN184403; organism=Citrus sinensis; type=EST; length=548bp
GAGGACAAGACAAATACAAGACAGAGGTTACAGACGTTGATTAGGCACAA
ATTGAGACGATGGAACAGACATAAATTACAGTTGCTTCTTTTTTTTTTTT
TCCCCTTTTGTTTATTGCGTTATTTAATTTATTTATTCAAACTTTTTTTT
TTTCTCTAAATCCTATCGGAGCAACTCAACTCCCCTTCAAACTTCATAGG
AGTTTCAAATTCCAAGACATCAGCTACTTGATTATTTAATAAACGCTGAC
TCAGCCAAGTCGATGGCTCGGGCAAGTCCGGCAGCCTTGTTCTGGCACTC
ACGGTGCTCGTCATCTGGATCACTATCAGCGACGATGCCAGCTCCAGCTT
GAAGGTAAGCCACCCATTCCCGGCGCTTCCTGGCATCCTTGTACGAGTAC
ATTGTGTCATAACGTGTACCGGTTTGGAACACCATGGTCCTTAGAGCCAG
GGCAATGTCCATATCTCCAGTAAAGGAAACACCGCCAAACCCACCACTGT
AGGGGCCACGTCTATTTACCTCCAACTCGTCAATTAACTCCATTGCTT
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