CN184401

Overview
NameCN184401
Unique NameCN184401
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length359
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN184401 vs. ExPASy Swiss-Prot
Match: KELP_ARATH (RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis thaliana GN=KELP PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.047e-20
Identity = 56/116 (48.28%), Postives = 71/116 (61.21%), Query Frame = 1 
Query:   16 MKAETKAKIEGTVREILVKSDMTETTEFQIRKQASEKMGLDLSQPEYKAFVRHVVTTFL--XXXXXXXXXXXXXXXXXXXXXXXXXXXXYDDEGNLIICQLNKKRRVTIQDFKGKT 357
            M+ ETK KIE TV EIL +SDM E TEF++RK ASEK+ +DLS+  +KAFVR VV  FL                              +DD+G+LIIC+L+ KRRVTIQ+FKGK+
Sbjct:    1 MEKETKEKIEKTVIEILSESDMKEITEFKVRKLASEKLAIDLSEKSHKAFVRSVVEKFLDEERAREYENSQVNKEEEDGDKDCGKGNKEFDDDGDLIICRLSDKRRVTIQEFKGKS 116
The following BLAST results are available for this feature:
BLAST of CN184401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
KELP_ARATH3.047e-2048.28RNA polymerase II transcriptional coactivator KELP... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0005H01_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184401 ID=CN184401; Name=CN184401; organism=Citrus sinensis; type=EST; length=359bp
GAGGCACAAGCAAAAATGAAAGCTGAAACTAAAGCCAAAATCGAAGGTAC
GGTCCGAGAAATACTGGTGAAATCGGACATGACCGAAACGACAGAGTTTC
AAATTCGGAAACAGGCTTCGGAAAAGATGGGACTCGATCTCTCACAACCA
GAGTACAAGGCTTTTGTTAGACACGTAGTCACTACCTTCCTCGAAGAACA
AGATCAGAAGTCCAAAGAAGAACAAGAAGAGGAAGAGGAAGAGGAAAATG
AAGCAGTTAAAAATGATAACGCTGAGTATGATGACGAGGGGAATCTCATT
ATTTGCCAACTGAATAAGAAGAGGAGGGTGACGATTCAAGATTTTAAAGG
CAAGACTTT
back to top