CN184400

Overview
NameCN184400
Unique NameCN184400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length555
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN184400 vs. ExPASy Swiss-Prot
Match: KELP_ARATH (RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis thaliana GN=KELP PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.829e-27
Identity = 56/79 (70.89%), Postives = 71/79 (89.87%), Query Frame = -1 
Query:  259 NAEYDDEGNLIICQLNKKRRVTIQDFKGKTLVSIREYYTKGGKELPSAKGISLTEEQWSALRKNVSAIDTAVKKMQSRI 495
            N E+DD+G+LIIC+L+ KRRVTIQ+FKGK+LVSIREYY K GKELP++KGISLT+EQWS  +KN+ AI+ AVKKM+SR+
Sbjct:   87 NKEFDDDGDLIICRLSDKRRVTIQEFKGKSLVSIREYYKKDGKELPTSKGISLTDEQWSTFKKNMPAIENAVKKMESRV 165
[Close]
BLAST of CN184400 vs. ExPASy Swiss-Prot
Match: KIWI_ARATH (RNA polymerase II transcriptional coactivator KIWI OS=Arabidopsis thaliana GN=KIWI PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.314e-12
Identity = 28/71 (39.44%), Postives = 48/71 (67.61%), Query Frame = -1 
Query:  271 DDEGNLIICQLNKKRRVTIQDFKGKTLVSIREYYTKGGKELPSAKGISLTEEQWSALRKNVSAIDTAVKKM 483
            D   ++++C ++K RRV+++++ GK  + IRE+Y K GK LP  KGISL+ +QW+ LR +   I+ A+  +
Sbjct:   36 DQSDDIVVCNISKNRRVSVRNWNGKIWIDIREFYVKDGKTLPGKKGISLSVDQWNTLRNHAEDIEKALSDL 106
The following BLAST results are available for this feature:
BLAST of CN184400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
KELP_ARATH1.829e-2770.89RNA polymerase II transcriptional coactivator KELP... [more]
KIWI_ARATH6.314e-1239.44RNA polymerase II transcriptional coactivator KIWI... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0005H01_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184400 ID=CN184400; Name=CN184400; organism=Citrus sinensis; type=EST; length=555bp
TAACAGTCGAACTACTAACACACCATTTTTTAAGTCTTAATACATGCTAG
CATTGATTAGAAATCCACATCAGTTGCGACAGATGATATGCTGCCACTCA
ACAATAGAGTGGTGGATCAAAAACATCTCCCACCACAAAAAAGATCCATA
TGGAGCCCCAAAAACTAGAGTCAAATCCCTTAATTACAACTATCCAGGGG
ACCTCAAGATTCACAAAGTACACATTCAAATTACAGGTCTCCGAGGGATC
TCTCACATGATCCGTGACTGCATCTTCTTGACAGCTGTGTCTATGGCAGA
TACATTCTTCCTGAGGGCTGACCATTGTTCCTCAGTCAATGATATTCCTT
TGGCAGAAGGAAGTTCTTTGCCGCCTTTTGTATAATATTCCCGTATCGAA
ACCAAAGTCTTGCCTTTAAAATCTTGAATCGTCACCCTCCTCTTCTTATT
CAGTTGGCAAATAATGAGATTCCCCTCGTCATCATACTCAGCGTTATCAT
TTTTAACTGCTTCATTTTCCTCTTCCTCTTCCTCTTCTTGTTCTTCTTTG
GACTT
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