CN184398

Overview
NameCN184398
Unique NameCN184398
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184398 vs. ExPASy Swiss-Prot
Match: RS18_ARATH (40S ribosomal protein S18 OS=Arabidopsis thaliana GN=RPS18A PE=1 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 5.102e-56
Identity = 107/131 (81.68%), Postives = 112/131 (85.50%), Query Frame = -2
Query:  214 GSRRLCLLLLQIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 606
            G +++   L  IKGIGRRLANIVCKKADVDMNKRAGELSAAE+DNLM +VANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH            VSKKR
Sbjct:   22 GKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152          
BLAST of CN184398 vs. ExPASy Swiss-Prot
Match: RS18_BRABE (40S ribosomal protein S18 OS=Branchiostoma belcheri GN=RPS18 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 1.819e-45
Identity = 86/131 (65.65%), Postives = 104/131 (79.39%), Query Frame = -2
Query:  214 GSRRLCLLLLQIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 606
            G R++   L  IKG+GRR +NIVCKKAD+D++KRAGELS  E++ L+ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N+LD KLR+DLERLKKIR HRGLRHYWGLRVRGQH            VSKK+
Sbjct:   22 GRRKIMFALTSIKGVGRRYSNIVCKKADIDLSKRAGELSDEEVERLITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVMANSLDNKLREDLERLKKIRAHRGLRHYWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CN184398 vs. ExPASy Swiss-Prot
Match: RS18_AEQIR (40S ribosomal protein S18 OS=Aequipecten irradians GN=RPS18 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 6.912e-45
Identity = 82/114 (71.93%), Postives = 99/114 (86.84%), Query Frame = -2
Query:  265 GSRRLCLLLLQIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQH 606
            G R++   +  IKG+GRR AN+VCKKADVD+ KRAGELS  E++ ++ +++NPRQ+KIP+WFLNRQKD KDGKYSQV+SNALD KLR+DLERLKKIR HRGLRHYWGLRVRGQH
Sbjct:   22 GKRKIMFAMTAIKGMGRRYANVVCKKADVDITKRAGELSEDEIERVITIMSNPRQYKIPNWFLNRQKDVKDGKYSQVMSNALDNKLREDLERLKKIRAHRGLRHYWGLRVRGQH 135          
BLAST of CN184398 vs. ExPASy Swiss-Prot
Match: RS18_DANRE (40S ribosomal protein S18 OS=Danio rerio GN=rps18 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.104e-42
Identity = 80/131 (61.07%), Postives = 102/131 (77.86%), Query Frame = -2
Query:  214 GSRRLCLLLLQIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 606
            G R++   +  IKG+GRR A++V +KAD+D+NKRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH            VSKK+
Sbjct:   22 GRRKIAFAITAIKGVGRRYAHVVLRKADIDLNKRAGELTEDEVERVVTIMQNPRQYKIPDWFLNRQKDIKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CN184398 vs. ExPASy Swiss-Prot
Match: RS18_ICTPU (40S ribosomal protein S18 OS=Ictalurus punctatus GN=rps18 PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.193e-42
Identity = 79/131 (60.31%), Postives = 102/131 (77.86%), Query Frame = -2
Query:  214 GSRRLCLLLLQIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 606
            G R++   +  IKG+GRR A++V +KAD+D++KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH            VSKK+
Sbjct:   22 GRRKIAFAITAIKGVGRRYAHVVLRKADIDLSKRAGELTEDEVERVVTIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CN184398 vs. ExPASy Swiss-Prot
Match: RS18_RAT (40S ribosomal protein S18 OS=Rattus norvegicus GN=Rps18 PE=1 SV=3)

HSP 1 Score: 170.629 bits (431), Expect = 5.477e-42
Identity = 79/131 (60.31%), Postives = 101/131 (77.10%), Query Frame = -2
Query:  214 GSRRLCLLLLQIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 606
            G R++   +  IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH            VSKK+
Sbjct:   22 GRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CN184398 vs. ExPASy Swiss-Prot
Match: RS18_PIG (40S ribosomal protein S18 OS=Sus scrofa GN=RPS18 PE=2 SV=3)

HSP 1 Score: 170.629 bits (431), Expect = 5.477e-42
Identity = 79/131 (60.31%), Postives = 101/131 (77.10%), Query Frame = -2
Query:  214 GSRRLCLLLLQIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 606
            G R++   +  IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH            VSKK+
Sbjct:   22 GRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CN184398 vs. ExPASy Swiss-Prot
Match: RS18_MOUSE (40S ribosomal protein S18 OS=Mus musculus GN=Rps18 PE=2 SV=3)

HSP 1 Score: 170.629 bits (431), Expect = 5.477e-42
Identity = 79/131 (60.31%), Postives = 101/131 (77.10%), Query Frame = -2
Query:  214 GSRRLCLLLLQIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 606
            G R++   +  IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH            VSKK+
Sbjct:   22 GRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CN184398 vs. ExPASy Swiss-Prot
Match: RS18_HUMAN (40S ribosomal protein S18 OS=Homo sapiens GN=RPS18 PE=1 SV=3)

HSP 1 Score: 170.629 bits (431), Expect = 5.477e-42
Identity = 79/131 (60.31%), Postives = 101/131 (77.10%), Query Frame = -2
Query:  214 GSRRLCLLLLQIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 606
            G R++   +  IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH            VSKK+
Sbjct:   22 GRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
BLAST of CN184398 vs. ExPASy Swiss-Prot
Match: RS18_CAPHI (40S ribosomal protein S18 OS=Capra hircus GN=RPS18 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.477e-42
Identity = 79/131 (60.31%), Postives = 101/131 (77.10%), Query Frame = -2
Query:  214 GSRRLCLLLLQIKGIGRRLANIVCKKADVDMNKRAGELSAAELDNLMVVVANPRQFKIPDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHXXXXXXXXXXXXVSKKR 606
            G R++   +  IKG+GRR A++V +KAD+D+ KRAGEL+  E++ ++ ++ NPRQ+KIPDWFLNRQKD KDGKYSQV++N LD KLR+DLERLKKIR HRGLRH+WGLRVRGQH            VSKK+
Sbjct:   22 GRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK 152          
The following BLAST results are available for this feature:
BLAST of CN184398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 58
Match NameE-valueIdentityDescription
RS18_ARATH5.102e-5681.6840S ribosomal protein S18 OS=Arabidopsis thaliana ... [more]
RS18_BRABE1.819e-4565.6540S ribosomal protein S18 OS=Branchiostoma belcher... [more]
RS18_AEQIR6.912e-4571.9340S ribosomal protein S18 OS=Aequipecten irradians... [more]
RS18_DANRE1.104e-4261.0740S ribosomal protein S18 OS=Danio rerio GN=rps18 ... [more]
RS18_ICTPU4.193e-4260.3140S ribosomal protein S18 OS=Ictalurus punctatus G... [more]
RS18_RAT5.477e-4260.3140S ribosomal protein S18 OS=Rattus norvegicus GN=... [more]
RS18_PIG5.477e-4260.3140S ribosomal protein S18 OS=Sus scrofa GN=RPS18 P... [more]
RS18_MOUSE5.477e-4260.3140S ribosomal protein S18 OS=Mus musculus GN=Rps18... [more]
RS18_HUMAN5.477e-4260.3140S ribosomal protein S18 OS=Homo sapiens GN=RPS18... [more]
RS18_CAPHI5.477e-4260.3140S ribosomal protein S18 OS=Capra hircus GN=RPS18... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005G24_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005G24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184398 ID=CN184398; Name=CN184398; organism=Citrus sinensis; type=EST; length=610bp
GAGGGAGAGAATATATGTTGCAAAACATCTGAATAAAAATATTACCATAG
AGAAAATAATAGATAAAAGACAGACAGTTCAAATGCTTAAAACCCATCCA
AAGAAAAGAAAATAAATCTAATATTGTCTGATGCAAATGTTCAGCAATAG
CAAGTCCAAACTCTTCCTGAACATGTGTATAGATTGTTCAAAACATTGAT
AAAGGACAGCTCAACGCTTCTTGGAGACACCAACAGTCTTTCCACGACGG
CCGGTGGTCTTGGTGTGTTGTCCACGGACACGAAGACCCCAGTAGTGCCT
GAGACCACGGTGGTTCCTGATCTTCTTCAGACGCTCCAAGTCATCTCTCA
ACTTCATGTCCAGTGCATTGGATACAACCTGAGAATACTTTCCATCCTTG
TAATCCTTCTGTCTGTTCAAGAACCAATCAGGGATTTTAAACTGTCGGGG
ATTTGCAACAACGACCATGAGATTGTCAAGTTCAGCAGCAGATAGTTCAC
CGGCCCTCTTGTTCATGTCAACATCAGCTTTCTTGCAAACGATGTTAGCC
AGTCGCCTTCCAATACCCTTAATTTGAAGTAAGAGCAAACATAATCTTCT
GCTTCCCGTC
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