CN184397

Overview
NameCN184397
Unique NameCN184397
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length233
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184397 vs. ExPASy Swiss-Prot
Match: MTDH_MESCR (Probable mannitol dehydrogenase OS=Mesembryanthemum crystallinum GN=ELI3 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 4.710e-29
Identity = 57/77 (74.03%), Postives = 62/77 (80.52%), Query Frame = 3
Query:    3 GVGCMVGACHSCESCANDLENYCPKMILTYSSINTDGTITYGGYSDHMVANERYIVRFPDSMPLDAAAPLLCAGITV 233
            GVGCMVG+C SCESC N LENYCPKMILTY S   DGT+TYGGYSD MV  E + VR PD+M LDA APLLCAG+TV
Sbjct:   96 GVGCMVGSCRSCESCENHLENYCPKMILTYGSTYYDGTLTYGGYSDIMVVEEHFAVRIPDNMALDATAPLLCAGVTV 172          
BLAST of CN184397 vs. ExPASy Swiss-Prot
Match: CADH5_ORYSJ (Putative cinnamyl alcohol dehydrogenase 5 OS=Oryza sativa subsp. japonica GN=CAD5 PE=3 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 8.883e-28
Identity = 51/77 (66.23%), Postives = 65/77 (84.42%), Query Frame = 3
Query:    3 GVGCMVGACHSCESCANDLENYCPKMILTYSSINTDGTITYGGYSDHMVANERYIVRFPDSMPLDAAAPLLCAGITV 233
            GVGCMV +CHSC+SC   LEN+CP +I TY+S++ DGT+TYGGYS  +V +ER++VRFP++MPLD  APLLCAGITV
Sbjct:   88 GVGCMVNSCHSCDSCNQGLENHCPGVIFTYNSVDKDGTVTYGGYSSMVVVHERFVVRFPEAMPLDKGAPLLCAGITV 164          
BLAST of CN184397 vs. ExPASy Swiss-Prot
Match: MTDH_FRAAN (Probable mannitol dehydrogenase OS=Fragaria ananassa GN=CAD PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.375e-27
Identity = 53/76 (69.74%), Postives = 63/76 (82.89%), Query Frame = 3
Query:    3 GVGCMVGACHSCESCANDLENYCPKMILTYSSINTDGTITYGGYSDHMVANERYIVRFPDSMPLDAAAPLLCAGIT 230
            GVGC+VG+C SCE+C + LENYCPK ILTY +   DG+ TYGGYSD MVA+E +IVR PD++PLD AAPLLCAGIT
Sbjct:   93 GVGCIVGSCRSCENCTDHLENYCPKQILTYGAKYYDGSTTYGGYSDIMVADEHFIVRIPDNLPLDGAAPLLCAGIT 168          
BLAST of CN184397 vs. ExPASy Swiss-Prot
Match: CADH3_ORYSJ (Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza sativa subsp. japonica GN=CAD3 PE=2 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 1.283e-26
Identity = 49/77 (63.64%), Postives = 63/77 (81.82%), Query Frame = 3
Query:    3 GVGCMVGACHSCESCANDLENYCPKMILTYSSINTDGTITYGGYSDHMVANERYIVRFPDSMPLDAAAPLLCAGITV 233
            GVGCMV +C SCESC N  EN+CP+ + TY+S++ DGT+TYGGYS  +V +ER++V FP++MPLD  APLLCAGITV
Sbjct:   98 GVGCMVNSCRSCESCNNGFENHCPEGVFTYNSVDKDGTVTYGGYSSMVVVHERFVVMFPEAMPLDVGAPLLCAGITV 174          
BLAST of CN184397 vs. ExPASy Swiss-Prot
Match: CADH8_ARATH (Cinnamyl alcohol dehydrogenase 8 OS=Arabidopsis thaliana GN=CAD8 PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.188e-26
Identity = 51/77 (66.23%), Postives = 60/77 (77.92%), Query Frame = 3
Query:    3 GVGCMVGACHSCESCANDLENYCPKMILTYSSINTDGTITYGGYSDHMVANERYIVRFPDSMPLDAAAPLLCAGITV 233
            GVGC+V +C SC+SC   +ENYCPK I TY     D TITYGGYSDHMV  E +++R PD++PLDAAAPLLCAGITV
Sbjct:   91 GVGCLVSSCGSCDSCTEGMENYCPKSIQTYGFPYYDNTITYGGYSDHMVCEEGFVIRIPDNLPLDAAAPLLCAGITV 167          
BLAST of CN184397 vs. ExPASy Swiss-Prot
Match: CADH7_ARATH (Cinnamyl alcohol dehydrogenase 7 OS=Arabidopsis thaliana GN=CAD7 PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 5.389e-25
Identity = 50/77 (64.94%), Postives = 61/77 (79.22%), Query Frame = 3
Query:    3 GVGCMVGACHSCESCANDLENYCPKMILTYSSINTDGTITYGGYSDHMVANERYIVRFPDSMPLDAAAPLLCAGITV 233
            GVG M G+C SC+SC +  ENYCPKMILT  + N D T+T+GGYSDHMV  E +I+R PD++PLD AAPLLCAG+TV
Sbjct:   91 GVGYMAGSCRSCDSCNDGDENYCPKMILTSGAKNFDDTMTHGGYSDHMVCAEDFIIRIPDNLPLDGAAPLLCAGVTV 167          
BLAST of CN184397 vs. ExPASy Swiss-Prot
Match: CADH9_ARATH (Probable cinnamyl alcohol dehydrogenase 9 OS=Arabidopsis thaliana GN=CAD9 PE=1 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 9.192e-25
Identity = 46/77 (59.74%), Postives = 64/77 (83.12%), Query Frame = 3
Query:    3 GVGCMVGACHSCESCANDLENYCPKMILTYSSINTDGTITYGGYSDHMVANERYIVRFPDSMPLDAAAPLLCAGITV 233
            GVG + G+C SCESC  DLENYCP+M  TY++I +DGT  YGGYS+++V ++R+++RFP+++P D+ APLLCAGITV
Sbjct:   95 GVGVISGSCQSCESCDQDLENYCPQMSFTYNAIGSDGTKNYGGYSENIVVDQRFVLRFPENLPSDSGAPLLCAGITV 171          
BLAST of CN184397 vs. ExPASy Swiss-Prot
Match: CADH6_ARATH (Probable cinnamyl alcohol dehydrogenase 6 OS=Arabidopsis thaliana GN=CAD6 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.568e-24
Identity = 47/77 (61.04%), Postives = 61/77 (79.22%), Query Frame = 3
Query:    3 GVGCMVGACHSCESCANDLENYCPKMILTYSSINTDGTITYGGYSDHMVANERYIVRFPDSMPLDAAAPLLCAGITV 233
            GVGC+V +C +CESC  D ENYC K I TY+ ++ DGTI YGGYSDH+V +ERY V+ P ++PL +AAPLLCAGI++
Sbjct:   96 GVGCIVDSCRTCESCREDQENYCTKAIATYNGVHHDGTINYGGYSDHIVVDERYAVKIPHTLPLVSAAPLLCAGISM 172          
BLAST of CN184397 vs. ExPASy Swiss-Prot
Match: GEDH1_OCIBA (Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GEDH1 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.048e-24
Identity = 49/76 (64.47%), Postives = 60/76 (78.95%), Query Frame = 3
Query:    3 GVGCMVGACHSCESCANDLENYCPKMILTYSSINTDGTITYGGYSDHMVANERYIVRFPDSMPLDAAAPLLCAGIT 230
            GVG +VG+C  C+ C+NDLENYC K ILTY +   DGTI  GGYSD MVA+E +I+R+P++ PLDA APLLCAGIT
Sbjct:   95 GVGVLVGSCRQCDQCSNDLENYCYKQILTYGAPYLDGTIARGGYSDIMVADEHFIIRWPENFPLDAGAPLLCAGIT 170          
BLAST of CN184397 vs. ExPASy Swiss-Prot
Match: MTDH_PETCR (Mannitol dehydrogenase (Fragment) OS=Petroselinum crispum GN=ELI3 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.493e-24
Identity = 45/76 (59.21%), Postives = 63/76 (82.89%), Query Frame = 3
Query:    3 GVGCMVGACHSCESCANDLENYCPKMILTYSSINTDGTITYGGYSDHMVANERYIVRFPDSMPLDAAAPLLCAGIT 230
            GVGC+VG+C SCE+C +D EN C K + TY+  N DG+ITYGGY+D MVA++ +++R+P+++PLD+ APLLCAGIT
Sbjct:   72 GVGCLVGSCLSCENCDDDSENNCAKQVQTYAFTNVDGSITYGGYADSMVADQHFVLRWPENLPLDSGAPLLCAGIT 147          
The following BLAST results are available for this feature:
BLAST of CN184397 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
MTDH_MESCR4.710e-2974.03Probable mannitol dehydrogenase OS=Mesembryanthemu... [more]
CADH5_ORYSJ8.883e-2866.23Putative cinnamyl alcohol dehydrogenase 5 OS=Oryza... [more]
MTDH_FRAAN3.375e-2769.74Probable mannitol dehydrogenase OS=Fragaria ananas... [more]
CADH3_ORYSJ1.283e-2663.64Probable cinnamyl alcohol dehydrogenase 3 OS=Oryza... [more]
CADH8_ARATH2.188e-2666.23Cinnamyl alcohol dehydrogenase 8 OS=Arabidopsis th... [more]
CADH7_ARATH5.389e-2564.94Cinnamyl alcohol dehydrogenase 7 OS=Arabidopsis th... [more]
CADH9_ARATH9.192e-2559.74Probable cinnamyl alcohol dehydrogenase 9 OS=Arabi... [more]
CADH6_ARATH1.568e-2461.04Probable cinnamyl alcohol dehydrogenase 6 OS=Arabi... [more]
GEDH1_OCIBA2.048e-2464.47Geraniol dehydrogenase 1 OS=Ocimum basilicum GN=GE... [more]
MTDH_PETCR3.493e-2459.21Mannitol dehydrogenase (Fragment) OS=Petroselinum ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005G23_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005G23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184397 ID=CN184397; Name=CN184397; organism=Citrus sinensis; type=EST; length=233bp
GTGGAGTTGGATGCATGGTCGGTGCATGCCACAGCTGCGAGAGCTGTGCC
AATGACCTTGAAAATTACTGTCCGAAAATGATACTCACCTACAGTTCCAT
TAACACTGACGGAACAATCACATACGGAGGCTACTCTGATCACATGGTTG
CCAATGAGCGCTACATTGTTCGATTCCCTGATAGCATGCCCCTTGATGCT
GCTGCCCCCCTGCTTTGCGCCGGGATTACCGTG
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