CN184391

Overview
NameCN184391
Unique NameCN184391
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length434
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184391 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.196e-32
Identity = 39/63 (61.90%), Postives = 49/63 (77.78%), Query Frame = 2
Query:  113 PLSFNGSGAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTKQDRWKGLAYD 301
            P + NGS ++ SVPSS+F G+SLKKV+SR   SKV S S +I A VDE+KQT +DRWKGLA+D
Sbjct:   15 PPNLNGSSSSASVPSSTFLGSSLKKVNSRFTNSKVSSGSLRIVASVDEDKQTDKDRWKGLAFD 77          

HSP 2 Score: 77.7962 bits (190), Expect = 1.196e-32
Identity = 36/49 (73.47%), Postives = 41/49 (83.67%), Query Frame = 3
Query:  285 RALPTTKSDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLR 431
            + L    SDDQQDITRGKG VDSLFQAP G+GTH+A+MSSY+YIS GLR
Sbjct:   72 KGLAFDTSDDQQDITRGKGKVDSLFQAPQGSGTHFAIMSSYEYISTGLR 120          
BLAST of CN184391 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.642e-32
Identity = 42/66 (63.64%), Postives = 53/66 (80.30%), Query Frame = 2
Query:  116 LSFNGSGAATSVPSSSFFGTSLKK-VSSRIPPSKVPSASFKITA---EVDENKQTKQDRWKGLAYD 301
            L+ NGSGA  S P+S+FFGTSLKK V+SR+P SKV + SFKI A   E++E++QT +DRWKGLAYD
Sbjct:   16 LNLNGSGAGASAPTSAFFGTSLKKAVASRVPNSKVTNGSFKIVAAEKEIEESQQTNKDRWKGLAYD 81          

HSP 2 Score: 75.485 bits (184), Expect = 2.642e-32
Identity = 35/42 (83.33%), Postives = 37/42 (88.10%), Query Frame = 3
Query:  306 SDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLR 431
            SDDQQDITRGKG VD LFQAPM  GTHYAVMSSY+Y+S GLR
Sbjct:   83 SDDQQDITRGKGMVDPLFQAPMDAGTHYAVMSSYEYLSTGLR 124          
BLAST of CN184391 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.825e-31
Identity = 42/66 (63.64%), Postives = 51/66 (77.27%), Query Frame = 2
Query:  116 LSFNGSGAATSVPSSSFFGTSLKKV-SSRIPPSKVPSASFKITA---EVDENKQTKQDRWKGLAYD 301
            L+ NGSG   S PSS+FFGTSLKKV SSR+P SK+ S SFKI A   E++E +QT+ DRW+GLAYD
Sbjct:   16 LNLNGSGGGASGPSSAFFGTSLKKVISSRVPNSKLTSGSFKIVAADKEIEETQQTEGDRWRGLAYD 81          

HSP 2 Score: 73.9442 bits (180), Expect = 4.825e-31
Identity = 36/49 (73.47%), Postives = 39/49 (79.59%), Query Frame = 3
Query:  285 RALPTTKSDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLR 431
            R L    SDDQQDITRGKG VDSLFQAPM  GTHYAV+SS+ Y+S GLR
Sbjct:   76 RGLAYDVSDDQQDITRGKGLVDSLFQAPMDAGTHYAVISSHKYLSAGLR 124          
BLAST of CN184391 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.386e-30
Identity = 38/42 (90.48%), Postives = 40/42 (95.24%), Query Frame = 3
Query:  306 SDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLR 431
            SDDQQDITRGKG VD+LFQAPM +GTHYAVMSSYDYISQGLR
Sbjct:   79 SDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLR 120          

HSP 2 Score: 71.633 bits (174), Expect = 1.386e-30
Identity = 38/65 (58.46%), Postives = 50/65 (76.92%), Query Frame = 2
Query:  113 PLSFNGSGAATS-VPSSSFFGTSLKKVSSRIPPSKVPSASFKITA-EVDENKQTKQDRWKGLAYD 301
            PLS NGSGA  S VPS++FFG+SLKK +++ P  K  S +FKI A E+ E++QT +D+WKGLAYD
Sbjct:   15 PLSLNGSGARASLVPSTAFFGSSLKKSAAKFP--KASSGNFKIVAQEISEDQQTDKDKWKGLAYD 77          
BLAST of CN184391 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.388e-30
Identity = 38/42 (90.48%), Postives = 40/42 (95.24%), Query Frame = 3
Query:  306 SDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLR 431
            SDDQQDITRGKG VD+LFQAPM +GTHYAVMSSYDYISQGLR
Sbjct:   79 SDDQQDITRGKGMVDTLFQAPMQSGTHYAVMSSYDYISQGLR 120          

HSP 2 Score: 71.633 bits (174), Expect = 1.388e-30
Identity = 38/65 (58.46%), Postives = 50/65 (76.92%), Query Frame = 2
Query:  113 PLSFNGSGAATS-VPSSSFFGTSLKKVSSRIPPSKVPSASFKITA-EVDENKQTKQDRWKGLAYD 301
            PLS NGSGA  S VPS++FFG+SLKK +++ P  K  S +FKI A E+ E++QT +D+WKGLAYD
Sbjct:   15 PLSLNGSGARASLVPSTAFFGSSLKKSAAKFP--KASSGNFKIVAQEISEDQQTDKDKWKGLAYD 77          
BLAST of CN184391 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.243e-27
Identity = 35/42 (83.33%), Postives = 39/42 (92.86%), Query Frame = 3
Query:  306 SDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLR 431
            SDDQQDITRGKG VDSLFQAP GTGTH+AV+ SY+Y+SQGLR
Sbjct:   83 SDDQQDITRGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLR 124          

HSP 2 Score: 63.929 bits (154), Expect = 2.243e-27
Identity = 36/67 (53.73%), Postives = 43/67 (64.18%), Query Frame = 2
Query:  113 PLSFNGSGAATSVPSSSFFGTSLKKVSSR-IPPSKVPSASFKITAE---VDENKQTKQDRWKGLAYD 301
            PLS N S A TSVPS++FFG +LKKV  + +   KV + S +I AE   VD  KQT  DRWKGL  D
Sbjct:   15 PLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNKSLRIVAEQIDVDPKKQTDSDRWKGLVQD 81          
BLAST of CN184391 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.092e-26
Identity = 37/49 (75.51%), Postives = 39/49 (79.59%), Query Frame = 3
Query:  285 RALPTTKSDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLR 431
            R L    SDDQQDITRGKG  D LFQAPMGTGTH AV+SSY+YIS GLR
Sbjct:   69 RGLAFDTSDDQQDITRGKGLADPLFQAPMGTGTHNAVLSSYEYISAGLR 117          

HSP 2 Score: 63.1586 bits (152), Expect = 1.092e-26
Identity = 33/70 (47.14%), Postives = 46/70 (65.71%), Query Frame = 2
Query:   92 SLMAAAVPLSFNGSGAATSVPSSSFFGTSLKKVSSRIPPSKVPSASFKITAEVDENKQTKQDRWKGLAYD 301
            S + A    + N S     VP+S+F G+ LK VSSR   SK+ + +FKI AE DE KQT++D+W+GLA+D
Sbjct:    6 STIGAVNRTTLNNSNYGGLVPNSAFLGSRLK-VSSRFTTSKMVTGNFKIVAEQDEEKQTEKDKWRGLAFD 74          
BLAST of CN184391 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.407e-26
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 3
Query:  306 SDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLR 431
            SDDQQDI RGKG VDSLFQAP GTGTH+AV+ SY+Y+SQGLR
Sbjct:   83 SDDQQDIARGKGMVDSLFQAPTGTGTHHAVLQSYEYVSQGLR 124          

HSP 2 Score: 62.3882 bits (150), Expect = 2.407e-26
Identity = 36/71 (50.70%), Postives = 43/71 (60.56%), Query Frame = 2
Query:  101 AAAVPLSFNGSGAATSVPSSSFFGTSLKKVSSR-IPPSKVPSASFKITAE---VDENKQTKQDRWKGLAYD 301
            A   PLS N S A TSVPS++FFG +LKKV  + +   KV + S +I AE    D  KQT  DRWKGL  D
Sbjct:   11 ANKAPLSLNNSVAGTSVPSTAFFGKTLKKVYGKGVSSPKVTNRSLRIAAEEKDADPKKQTYSDRWKGLVQD 81          
BLAST of CN184391 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 6.903e-26
Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = 3
Query:  285 RALPTTKSDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRT 434
            + L    SDDQQDI RGKG VDSLFQAP GTGTH+A+M+SY+Y+SQ L+T
Sbjct:   71 KGLYDNTSDDQQDIARGKGLVDSLFQAPTGTGTHHAIMNSYEYVSQALKT 120          

HSP 2 Score: 60.8474 bits (146), Expect = 6.903e-26
Identity = 37/69 (53.62%), Postives = 48/69 (69.57%), Query Frame = 2
Query:  101 AAAVPLSFNGSGAATSVPSSSFFGTSLKKVSSR-IPPSKVPSASFKITA-EVDENKQTKQDRWKGLAYD 301
            A+  PLS N S A TSVPS++FFG SLKKV ++ +   KV + + ++ A EVDE   TK+DRWKGL YD
Sbjct:   11 ASKAPLSLNNSVAGTSVPSTAFFGKSLKKVYAKGVSSPKVSNRNLRVVAQEVDE---TKEDRWKGL-YD 75          
BLAST of CN184391 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 75.8702 bits (185), Expect = 6.959e-22
Identity = 35/43 (81.40%), Postives = 39/43 (90.70%), Query Frame = 3
Query:  306 SDDQQDITRGKGAVDSLFQAPMGTGTHYAVMSSYDYISQGLRT 434
            SDDQQDITRGKG VD+LFQAPMG GTH AV+SSYDYISQG ++
Sbjct:   75 SDDQQDITRGKGLVDNLFQAPMGDGTHVAVLSSYDYISQGQKS 117          

HSP 2 Score: 47.3654 bits (111), Expect = 6.959e-22
Identity = 32/64 (50.00%), Postives = 38/64 (59.38%), Query Frame = 2
Query:  134 GAATSVPS-SSFFGTSLKK--VSSRIP---PSKVPSASFKITA--EVDENKQTKQDRWKGLAYD 301
            GA  S P+ SSF G  L K  VS+ +     S   ++ FK  A  EVDE KQT +DRWKGLAYD
Sbjct:   10 GAPASTPTRSSFLGKKLNKPQVSAAVTYHGKSSSSNSRFKAMAAKEVDETKQTDEDRWKGLAYD 73          
The following BLAST results are available for this feature:
BLAST of CN184391 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RCA_MALDO1.196e-3261.90Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU2.642e-3263.64Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU4.825e-3163.64Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_LARTR1.386e-3090.48Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR1.388e-3090.48Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_TOBAC2.243e-2783.33Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA1.092e-2675.51Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC2.407e-2680.95Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN6.903e-2668.00Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MAIZE6.959e-2281.40Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005G19_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005G19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184391 ID=CN184391; Name=CN184391; organism=Citrus sinensis; type=EST; length=434bp
GAGGCGCACTCAGCGCATTGCTTCGCTTTCCTTTGCCTGCATTACAGCGT
GACCCTTTAGCTACTTCAATCACAGCCGTCCAATTCTCGCTAGCCTAATG
GCTGCTGCTGTACCGTTGAGCTTCAATGGCTCTGGTGCTGCAACCTCTGT
CCCAAGCTCATCTTTCTTTGGCACCAGCTTGAAGAAGGTAAGCTCAAGGA
TCCCCCCATCCAAGGTCCCTTCTGCGAGCTTCAAGATTACTGCTGAAGTC
GATGAGAACAAGCAGACCAAGCAGGACAGATGGAAGGGCCTTGCCTACGA
CGAAATCTGATGACCAACAAGACATCACCAGAGGAAAAGGTGCTGTGGAC
TCTCTGTTCCAAGCCCCCATGGGAACCGGAACTCACTATGCTGTCATGAG
TTCTTATGACTACATCAGCCAAGGTCTCCGCACA
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