CN184390

Overview
NameCN184390
Unique NameCN184390
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length629
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184390 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 240.736 bits (613), Expect = 4.525e-63
Identity = 115/159 (72.33%), Postives = 135/159 (84.91%), Query Frame = -2
Query:  155 CKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYGKAAQQM-NVPVPEGCTDPTAENFDPTARSDDGSCQYT 628
            CKGIFR DNV D+DIVK+VD+FPGQSIDFFGALRARVYDDEVR W            LVNS+E  P FEQP+MT+EKL+EYG M+V+EQENVKRVQLA++YLSEAALG+AN+DA+++G+FYG+ AQQ  N+PVPEGCTDP A+NFDPTARSDDGSC YT
Sbjct:  307 CKGIFRTDNVPDEDIVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSDTGVENIGKRLVNSREGPPEFEQPKMTIEKLMEYGYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYGQGAQQAGNLPVPEGCTDPVAKNFDPTARSDDGSCLYT 465          
BLAST of CN184390 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 4.525e-63
Identity = 121/159 (76.10%), Postives = 132/159 (83.02%), Query Frame = -2
Query:  158 CKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFY-GKAAQQM-NVPVPEGCTDPTAENFDPTARSDDGSCQY 628
            CKGIFR DNVADDDIVKLVDTFPGQSIDFFGALRARVY DEVR W            LVNSKE  P+FEQP+MT++KLL YG M+VQEQENVKRVQLADKY+SEAALG+AN DAI+ G FY G+AAQQ+ NVPVPEGCTDP A N+DPTARSDDGSC Y
Sbjct:  316 CKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYHDEVRKWVSEVGVDTIGKKLVNSKEGPPSFEQPKMTIDKLLGYGGMLVQEQENVKRVQLADKYMSEAALGDANNDAIKRGTFYGGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVY 474          
BLAST of CN184390 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 236.884 bits (603), Expect = 6.534e-62
Identity = 114/157 (72.61%), Postives = 126/157 (80.25%), Query Frame = -2
Query:  158 CKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQY 628
            CKGIFR D + D+DIV LVD FPGQSIDFFGALRARVYDDEVR +            LVNS+E  P FEQP MT EKL+EYGNM+V EQENVKRVQLA+ YLS+AALG+ANADAI  G FYGK AQQ+N+PVPEGCTDP AENFDPTARSDDG+C Y
Sbjct:  316 CKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVY 472          
BLAST of CN184390 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.456e-61
Identity = 110/158 (69.62%), Postives = 132/158 (83.54%), Query Frame = -2
Query:  155 CKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYT 628
            CKGIF+ DNV+D+ +VK+VDTFPGQSIDFFGALRARVYDDEVR W            LVNS++   TFEQP+MT+EKLLEYG+M+VQEQ+NVKRVQLAD Y+S+AALG+AN DA+++G+FYGK AQQ  +PVPEGCTD  A+N+DPTARSDDGSC YT
Sbjct:  306 CKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYT 463          
BLAST of CN184390 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 226.868 bits (577), Expect = 6.761e-59
Identity = 107/159 (67.30%), Postives = 125/159 (78.62%), Query Frame = -2
Query:  152 CKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 628
            C GIF+ D V  + +VKLVD FPGQSIDFFGALRARVY DEVR W            LVNSK+  P FEQP MT++KL+EYGNM+VQEQENVKRVQLAD+Y+S AALG+AN DAI  G F+GKAAQQ+++PV +GCTDP A+N+DPTARSDDGSC Y L
Sbjct:  314 CTGIFKTDKVPAEHVVKLVDAFPGQSIDFFGALRARVYHDEVRKWVNSVGVDNVGKKLVNSKDGPPVFEQPEMTLQKLMEYGNMLVQEQENVKRVQLADQYMSSAALGDANKDAIDRGTFFGKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTYNL 472          
BLAST of CN184390 vs. ExPASy Swiss-Prot
Match: RCA_MALDO (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Malus domestica GN=RCA PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.148e-48
Identity = 94/122 (77.05%), Postives = 103/122 (84.43%), Query Frame = -2
Query:  263 CKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYG 628
            C GIFR+DNVA +DIVKLVDTFPGQSIDFFGALRARVYDDEVR W            LVNSKE  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADKYLSEAALG+AN+DA+ +G FYG
Sbjct:  316 CIGIFRSDNVAKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWITGVGVDSIGKKLVNSKEGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437          
BLAST of CN184390 vs. ExPASy Swiss-Prot
Match: RCAB_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic OS=Hordeum vulgare GN=RCAB PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 1.727e-46
Identity = 89/123 (72.36%), Postives = 103/123 (83.74%), Query Frame = -2
Query:  260 CKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFYGK 628
            CKGIFR DNV D+ +V+LVDTFPGQSIDFFGALRARVYDDEVR W            LVNS+E  PTF+QP+MT+EKL+EYG+M+VQEQENVKRVQLADKYLSEAALG+AN DA+++G FYGK
Sbjct:  303 CKGIFRTDNVPDEAVVRLVDTFPGQSIDFFGALRARVYDDEVRKWVGEIGVENISKRLVNSREGPPTFDQPKMTIEKLMEYGHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYGK 425          
BLAST of CN184390 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 3.258e-45
Identity = 87/121 (71.90%), Postives = 100/121 (82.64%), Query Frame = -2
Query:  266 CKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFY 628
            CKGIFR D V ++DI KLVDTFPGQSIDFFGALRARVYDDEVR W            LVNSKE  PTF+QP+M+++KLL+YGNM+VQEQENVKRVQLADKYL+EAALG AN DAI+SG+F+
Sbjct:  318 CKGIFRTDGVPEEDITKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDATGKKLVNSKEGPPTFDQPKMSLDKLLQYGNMLVQEQENVKRVQLADKYLNEAALGNANEDAIKSGSFF 438          
BLAST of CN184390 vs. ExPASy Swiss-Prot
Match: RCA2_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Larrea tridentata GN=RCA2 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 5.557e-45
Identity = 87/120 (72.50%), Postives = 99/120 (82.50%), Query Frame = -2
Query:  269 CKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNF 628
            CKGIFR DNV ++DIVK+VD FPGQSIDFFGALRARVYDDEVR W            LVNSKE  PTFEQP+MT++KLL+YGNM+V+EQENVKRVQLADKY+SEAALG+AN DAI+ G F
Sbjct:  316 CKGIFRTDNVPEEDIVKVVDQFPGQSIDFFGALRARVYDDEVRKWVSEVGVDTIGKKLVNSKEGPPTFEQPKMTIDKLLQYGNMLVEEQENVKRVQLADKYMSEAALGDANQDAIKRGTF 435          
BLAST of CN184390 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.758e-44
Identity = 86/121 (71.07%), Postives = 98/121 (80.99%), Query Frame = -2
Query:  266 CKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEANADAIQSGNFY 628
            C GIFR DNV  +D+VK+VD FPGQSIDFFGALRARVYDDEVR W            L+NS +  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLADKYL EAALG+ANADAI +G+F+
Sbjct:  320 CTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADKYLKEAALGDANADAINNGSFF 440          
The following BLAST results are available for this feature:
BLAST of CN184390 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
RCA_ORYSJ4.525e-6372.33Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_LARTR4.525e-6376.10Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH6.534e-6272.61Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU1.456e-6169.62Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL6.761e-5967.30Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_MALDO3.148e-4877.05Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAB_HORVU1.727e-4672.36Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAAU3.258e-4571.90Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_LARTR5.557e-4572.50Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_TOBAC2.758e-4471.07Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005G19_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005G19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184390 ID=CN184390; Name=CN184390; organism=Citrus sinensis; type=EST; length=629bp
TTTTTTTAAGATCGAATAAAGAGTTGTGATATAACACAAAATTAGAGGAT
TCTTTCTAATTAACAAAGAAATGAAAATGCAACAATATTATTTGAATATC
TCACATCCTAAGCAAAGTGCGACACTTCTCAACCCTTAGAAACAAGGCCT
AAAGCGTGTATTGGCAGCTTCCATCATCACTTCTTGCAGTTGGATCAAAG
TTTTCTGCAGTAGGATCAGTACATCCTTCAGGAACTGGAACATTCATTTG
CTGGGCTGCTTTGCCATAGAAATTTCCACTCTGAATAGCATCTGCATTAG
CTTCACCAAGAGCGGCCTCACTCAAATACTTGTCAGCCAACTGAACTCTC
TTCACATTCTCTTGCTCTTGCACAATCATGTTTCCGTACTCGAGCAGCTT
CTCCATTGTCATCCTTGGTTGCTCGAATGTTGGGGCTGCTTCCTTTGAGT
TCACAAGGCTCTTGCCAATGCTTCCAACACCAATACCAGAGATCCAATTC
CTCACCTCATCATCATAGACTCTGGCCCTCAGGGCTCCAAAGAAATCAAT
GGATTGGCCGGGGAAGGTGTCAACAAGCTTGACAATGTCGTCATCAGCCA
CATTGTCATTCCTGAAGATACCCTTGCAC
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