CN184387

Overview
NameCN184387
Unique NameCN184387
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184387 vs. ExPASy Swiss-Prot
Match: RFS1_ARATH (Probable galactinol--sucrose galactosyltransferase 1 OS=Arabidopsis thaliana GN=RFS1 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.799e-37
Identity = 75/121 (61.98%), Postives = 96/121 (79.34%), Query Frame = -2
Query:  294 VAYLPKNATLPITLKSREYEVYTVVPVKELSSGTRFAPIGLVKMFNSGGAIKELRYESEGTA-TVDMKVRGCGEFGAYSSA-RPRRIAVDSEEVQFGYEEESGLVTLTLRVPKEELYLWNI 650
            + YLPK+ +LP+TL  REYEV+TVVPVKE S G++FAP+GL++MFNSGGAI  LRY+ EGT   V MK+RG G  G YSS  RPR + VDS++V++ YE ESGLVT TL VP++ELYLW++
Sbjct:  631 LVYLPKDTSLPVTLMPREYEVFTVVPVKEFSDGSKFAPVGLMEMFNSGGAIVSLRYDDEGTKFVVRMKLRGSGLVGVYSSVRRPRSVTVDSDDVEYRYEPESGLVTFTLGVPEKELYLWDV 751          
BLAST of CN184387 vs. ExPASy Swiss-Prot
Match: RFS6_ARATH (Probable galactinol--sucrose galactosyltransferase 6 OS=Arabidopsis thaliana GN=RFS6 PE=2 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 1.925e-27
Identity = 62/121 (51.24%), Postives = 84/121 (69.42%), Query Frame = -2
Query:  282 LPKNATLPITLKSREYEVYTVVPVKELSSGTRFAPIGLVKMFNSGGAIKELRYESEGTATVDMKVRGCGEFGAYSSARPRRIAVDSEEVQFGYEEESGLVTLTL-RVPKEELYLWNISFEL 641
            +P N +LP++LK RE+E++TV P+  L  G  FAPIGLV M+NSGGAI+ LRYE+E    V M+V+GCG+FG+YSS +P+R  V+S E+ F Y+  SGLVT  L ++P E      I  EL
Sbjct:  630 MPYNVSLPVSLKIREHEIFTVSPISHLVDGVSFAPIGLVNMYNSGGAIEGLRYEAEKMKVV-MEVKGCGKFGSYSSVKPKRCVVESNEIAFEYDSSSGLVTFELDKMPIENKRFHLIQVEL 749          
BLAST of CN184387 vs. ExPASy Swiss-Prot
Match: RFS2_ARATH (Probable galactinol--sucrose galactosyltransferase 2 OS=Arabidopsis thaliana GN=RFS2 PE=2 SV=2)

HSP 1 Score: 116.316 bits (290), Expect = 1.380e-25
Identity = 63/143 (44.06%), Postives = 85/143 (59.44%), Query Frame = -2
Query:  294 VAYLPKNATLPITLKSREYEVYTVVPVKELSSGTRFAPIGLVKMFNSGGAIKELR-----------YESE-------------GTATVDMKVRGCGEFGAYSSARPRRIAVDSEEVQFGYEEESGLVTLTLRVPKEELYLWNI 650
            V  LPK A++P+TLK  EYE++ + P+KE++    FAPIGLV MFNS GAI+ +            ++ E              TA V + VRGCG FGAYSS RP + AV+S E  F Y+ E GLVTL L V +EE++ W++
Sbjct:  627 VVRLPKGASIPLTLKVLEYELFHISPLKEITENISFAPIGLVDMFNSSGAIESIDINHVTDKNPEFFDGEISSASPALSDNRSPTALVSVSVRGCGRFGAYSSQRPLKCAVESTETDFTYDAEVGLVTLNLPVTREEMFRWHV 769          
BLAST of CN184387 vs. ExPASy Swiss-Prot
Match: RFS4_ARATH (Probable galactinol--sucrose galactosyltransferase 4 OS=Arabidopsis thaliana GN=RFS4 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.067e-13
Identity = 41/117 (35.04%), Postives = 73/117 (62.39%), Query Frame = -2
Query:  288 KNATLPITLKSREYEVYTVVPVKEL-SSGTRFAPIGLVKMFNSGGAIKELRYESEGTATVDMKVRGCGEFGAYSSARPRRIAVDSEEVQFGYEEESGLVTLTLRVPKEELYLWNISF 635
            K+  + ITL+   +++ + VPV EL SSG RF P+GL+ MFN  G +++++   + +  VD  V+G G F AYSS+ P +  ++ +E +F +EEE+G ++  +   +E   + ++SF
Sbjct:  760 KSEAMKITLEPSAFDLLSFVPVTELVSSGVRFVPLGLINMFNCVGTVQDMKVTGDNSIRVD--VKGEGRFMAYSSSAPVKCYLNDKEAEFKWEEETGKLSFFVPWVEESGGISHLSF 874          
BLAST of CN184387 vs. ExPASy Swiss-Prot
Match: RFS5_ARATH (Probable galactinol--sucrose galactosyltransferase 5 OS=Arabidopsis thaliana GN=RFS5 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.699e-13
Identity = 42/98 (42.86%), Postives = 60/98 (61.22%), Query Frame = -2
Query:  342 NATLPITLKSREYEVYTVVPVKELSSGT-RFAPIGLVKMFNSGGAIKELRYESEGTATVDMKVRGCGEFGAYSSARPRRIAVDSEEVQFGYEEESGLV 632
            N  L +TL+  ++E+ TV PV  +   + RFAPIGLV M N+ GAI+ L Y  E   +V++ V G GEF  Y+S +P    +D E V+FGYE+   +V
Sbjct:  672 NDDLELTLEPFKFELITVSPVVTIEGNSVRFAPIGLVNMLNTSGAIRSLVYNDE---SVEVGVFGAGEFRVYASKKPVSCLIDGEVVEFGYEDSMVMV 766          
BLAST of CN184387 vs. ExPASy Swiss-Prot
Match: STSYN_PEA (Stachyose synthase OS=Pisum sativum GN=STS1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.854e-13
Identity = 37/89 (41.57%), Postives = 54/89 (60.67%), Query Frame = -2
Query:  369 KNATLPITLKSREYEVYTVVPVKELSSGTRFAPIGLVKMFNSGGAIKELRYESEGTATVDMKVRGCGEFGAYSSARPRRIAVDSEEVQF 635
            K+  +  T++   +E+Y+ VPV +L  G +FAPIGL  MFNSGG + +L Y   G     +KV+G G F AYSS  P++  ++  EV F
Sbjct:  740 KSEPIQFTIQPSTFELYSFVPVTKLCGGIKFAPIGLTNMFNSGGTVIDLEYVGNG---AKIKVKGGGSFLAYSSESPKKFQLNGCEVDF 825          
BLAST of CN184387 vs. ExPASy Swiss-Prot
Match: RFS_ORYSJ (Galactinol--sucrose galactosyltransferase OS=Oryza sativa subsp. japonica GN=RFS PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.026e-12
Identity = 41/106 (38.68%), Postives = 64/106 (60.38%), Query Frame = -2
Query:  336 LPKNATLPITLKSREYEVYTVVPVKELSS---GTRFAPIGLVKMFNSGGAIKELRY-ESEGTATVDMKVRGCGEFGAYSSARPRRIAVDSEEVQFGYEEESGLVTL 641
            L ++ ++ +TL+   YE+  V PV+ + S   G  FAPIGL  M N+GGA++       +G    ++ V+G GE  AYSSARPR   V+ ++ +F YE+  G+VT+
Sbjct:  662 LRRDESVELTLEPFTYELLVVAPVRAIVSPELGIGFAPIGLANMLNAGGAVQGFEAARKDGDVAAEVAVKGAGEMVAYSSARPRLCKVNGQDAEFKYED--GIVTV 765          
BLAST of CN184387 vs. ExPASy Swiss-Prot
Match: RFS_PEA (Galactinol--sucrose galactosyltransferase OS=Pisum sativum GN=RFS PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.683e-12
Identity = 36/91 (39.56%), Postives = 57/91 (62.64%), Query Frame = -2
Query:  354 LPITLKSREYEVYTVVPVKELSSGT-RFAPIGLVKMFNSGGAIKELRYESEGTATVDMKVRGCGEFGAYSSARPRRIAVDSEEVQFGYEEE 623
            L ++L+   +E+ TV P+K  S    +FAPIGLV M NSGGA++ L ++ +  + V + VRGCGE   ++S +P    +D   V+F YE++
Sbjct:  688 LEVSLEPFSFELMTVSPLKVFSKRLIQFAPIGLVNMLNSGGAVQSLEFD-DSASLVKIGVRGCGELSVFASEKPVCCKIDGVSVEFDYEDK 777          
The following BLAST results are available for this feature:
BLAST of CN184387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
RFS1_ARATH7.799e-3761.98Probable galactinol--sucrose galactosyltransferase... [more]
RFS6_ARATH1.925e-2751.24Probable galactinol--sucrose galactosyltransferase... [more]
RFS2_ARATH1.380e-2544.06Probable galactinol--sucrose galactosyltransferase... [more]
RFS4_ARATH2.067e-1335.04Probable galactinol--sucrose galactosyltransferase... [more]
RFS5_ARATH2.699e-1342.86Probable galactinol--sucrose galactosyltransferase... [more]
STSYN_PEA7.854e-1341.57Stachyose synthase OS=Pisum sativum GN=STS1 PE=1 S... [more]
RFS_ORYSJ1.026e-1238.68Galactinol--sucrose galactosyltransferase OS=Oryza... [more]
RFS_PEA8.683e-1239.56Galactinol--sucrose galactosyltransferase OS=Pisum... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0005G17_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005G17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184387 ID=CN184387; Name=CN184387; organism=Citrus sinensis; type=EST; length=651bp
CACAATCCTCTAGATTTCTTATTTTCTCATTACTAATAGGTATTCTACAA
TAACCAAATAAGTTAAATGCTTAGAAGGACATTTCGGATAGTGGCTGGTA
GAGCCCTTTCATGATGAGAAGAGGAAAGATAGCAGAGAAGAAACTATCTC
CATTGTCTCCTTAATGTTAATTTTATGCCATGATGAATACAAGAAGAAGC
TACCACCATTTTCCTCCTACAAATTAATAGAACTCTAACTCAAGAGTATC
ATGAGACGTGGTACAAAAGTTCTAGGCCTTACAGCTCAAATGATATGTTC
CAAAGGTACAATTCTTCCTTTGGAACTCTCAAAGTGAGAGTCACCAAACC
AGATTCTTCTTCATATCCAAACTGCACTTCCTCTGAATCAACTGCTATTC
TCCTGGGTCGAGCTGATGAATATGCTCCAAATTCGCCACATCCACGGACT
TTCATGTCGACAGTTGCAGTCCCCTCAGATTCATATCTCAACTCTTTAAT
AGCTCCTCCAGAATTGAACATCTTGACAAGACCAATGGGAGCAAATCTAG
TCCCACTGGACAACTCCTTCACAGGCACTACAGTATAAACTTCATATTCT
CTCGACTTCAGTGTTATTGGCAGAGTTGCATTCTTTGGAAGATAAGCTAC
C
back to top