CN184383

Overview
NameCN184383
Unique NameCN184383
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184383 vs. ExPASy Swiss-Prot
Match: GCST_ARATH (Aminomethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=GDCST PE=1 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 2.479e-106
Identity = 184/213 (86.38%), Postives = 204/213 (95.77%), Query Frame = 2
Query:   80 MRGGSLWQLGQSITRRLALADKKTIARRHFASDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFR 718
            MRGGSLWQLGQSITRRLA +DKK ++RR+FAS+A+ LKKTAL+DFHVA+GGKMVPFAGWSMPIQYKDSIM+ST+NCR+NGSLFDV+HMCGLSLKGKDCVPFLE LV+ADVAGLAPGTG+LTVFTNE GG+IDDSVITKV D+HIYLVVNAGCRDKDLAHIE HMK+F +KGGDVSWHIHDERSLLALQGPLAAPVLQHLTK+DLSKLYFG F+
Sbjct:    1 MRGGSLWQLGQSITRRLAQSDKKVVSRRYFASEAD-LKKTALYDFHVAHGGKMVPFAGWSMPIQYKDSIMDSTVNCRENGSLFDVAHMCGLSLKGKDCVPFLETLVVADVAGLAPGTGSLTVFTNEKGGAIDDSVITKVTDEHIYLVVNAGCRDKDLAHIEEHMKAFKSKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKEDLSKLYFGNFQ 212          
BLAST of CN184383 vs. ExPASy Swiss-Prot
Match: GCST_SOLTU (Aminomethyltransferase, mitochondrial OS=Solanum tuberosum GN=GDCST PE=2 SV=1)

HSP 1 Score: 382.104 bits (980), Expect = 1.607e-105
Identity = 188/213 (88.26%), Postives = 201/213 (94.37%), Query Frame = 2
Query:   80 MRGGSLWQLGQSITRRLALADKKTIARRHFASDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFR 718
            MRGG LWQLGQSITRRLA ADKKTI RR FASDA+ LKKT L+DFHV NGGKMVPFAGWSMPIQYKDSIM+ST+NCR+NGSLFDVSHMCGLSLKGKD +PFLEKLVIADVAGLAPGTG+LTVFTNE GG+IDDSV+TKV +DHIYLVVNAGCRDKDLAHIE HMKSF +KGGDVSWHIHDERSLLALQGPLAAPVLQ+LTKDDLSK+YFGEFR
Sbjct:    1 MRGG-LWQLGQSITRRLAQADKKTIGRRCFASDAD-LKKTVLYDFHVVNGGKMVPFAGWSMPIQYKDSIMDSTVNCRENGSLFDVSHMCGLSLKGKDTIPFLEKLVIADVAGLAPGTGSLTVFTNEKGGAIDDSVVTKVTNDHIYLVVNAGCRDKDLAHIEEHMKSFKSKGGDVSWHIHDERSLLALQGPLAAPVLQYLTKDDLSKMYFGEFR 211          
BLAST of CN184383 vs. ExPASy Swiss-Prot
Match: GCST_MESCR (Aminomethyltransferase, mitochondrial OS=Mesembryanthemum crystallinum GN=GDCST PE=2 SV=1)

HSP 1 Score: 380.948 bits (977), Expect = 3.580e-105
Identity = 181/212 (85.38%), Postives = 200/212 (94.34%), Query Frame = 2
Query:   80 MRGGSLWQLGQSITRRLALADKKTIARRHFASDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEF 715
            MRGG LWQLGQS+TRRLA A+KK IARR FAS+A+ LKKTAL+DFHVANGGKMVPFAGWSMPIQYKDSIM+ST+NCR+NGSLFDV+HMCGLSLKGKDC+PFLEKLV+ D+AGLAPGTGTL+V TNE GG+IDD+VITKV DDHIYLVVNAGCR+KDLAHIE HMK+F AKGGDVSWHIHDERSLLALQGPLAAPVLQHLTK+DLSK YFG+F
Sbjct:    1 MRGGGLWQLGQSVTRRLAQAEKKVIARRCFASEAD-LKKTALYDFHVANGGKMVPFAGWSMPIQYKDSIMDSTINCRENGSLFDVAHMCGLSLKGKDCIPFLEKLVVGDIAGLAPGTGTLSVLTNEKGGAIDDTVITKVTDDHIYLVVNAGCREKDLAHIEEHMKAFKAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKEDLSKFYFGQF 211          
BLAST of CN184383 vs. ExPASy Swiss-Prot
Match: GCST_FLATR (Aminomethyltransferase, mitochondrial OS=Flaveria trinervia GN=GDCST PE=3 SV=1)

HSP 1 Score: 377.096 bits (967), Expect = 5.170e-104
Identity = 184/213 (86.38%), Postives = 198/213 (92.96%), Query Frame = 2
Query:   80 MRGGSLWQLGQSITRRLALADKKTIARRHFASDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFR 718
            MRGG LWQ+GQSITRRL  +DKKTI RR +AS+A+ LKKT L+DFHVANGGKMVPFAGWSMPIQYKDSIMEST+NCR+NGSLFDVSHMCGLSLKGKDCV FLEKLV+ADVAGLAPGTG+LTVFTNE GG+IDDSVITKV DDHIYLVVNAGCRDKDLAHIE HMK+F AKGGDVSWHIHDERSLLALQGPLA   LQHLTKDDLSK+YFG+FR
Sbjct:    1 MRGG-LWQVGQSITRRLGQSDKKTIVRRWYASEAD-LKKTVLYDFHVANGGKMVPFAGWSMPIQYKDSIMESTINCRENGSLFDVSHMCGLSLKGKDCVAFLEKLVVADVAGLAPGTGSLTVFTNEKGGAIDDSVITKVTDDHIYLVVNAGCRDKDLAHIEQHMKAFKAKGGDVSWHIHDERSLLALQGPLAGSTLQHLTKDDLSKMYFGDFR 211          
BLAST of CN184383 vs. ExPASy Swiss-Prot
Match: GCST_FLAPR (Aminomethyltransferase, mitochondrial OS=Flaveria pringlei GN=GDCST PE=2 SV=1)

HSP 1 Score: 376.711 bits (966), Expect = 6.752e-104
Identity = 184/213 (86.38%), Postives = 199/213 (93.43%), Query Frame = 2
Query:   80 MRGGSLWQLGQSITRRLALADKKTIARRHFASDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFR 718
            MRGG LWQLGQSITRRL  +DKKTIARR +AS+A+ LKKT L+DFHVANGGKMVPFAGWSMPIQYKDSIMEST+NCR+NGSLFDVSHMCGLSLKGKDCVPFLEKLV+ADVAGL PGTG+LTVFTNE GG+IDDSVITKV DDHIYLVVNAGCRDKDLAHIE HMK+F AKGGDVSWHI+DERSLLALQGPLA   LQHLTK+DLSK+YFG+FR
Sbjct:    1 MRGG-LWQLGQSITRRLGQSDKKTIARRCYASEAD-LKKTVLYDFHVANGGKMVPFAGWSMPIQYKDSIMESTINCRENGSLFDVSHMCGLSLKGKDCVPFLEKLVVADVAGLRPGTGSLTVFTNEKGGAIDDSVITKVTDDHIYLVVNAGCRDKDLAHIEEHMKAFKAKGGDVSWHIYDERSLLALQGPLAGSTLQHLTKEDLSKMYFGDFR 211          
BLAST of CN184383 vs. ExPASy Swiss-Prot
Match: GCST_FLAAN (Aminomethyltransferase, mitochondrial OS=Flaveria anomala GN=GDCST PE=3 SV=1)

HSP 1 Score: 370.933 bits (951), Expect = 3.705e-102
Identity = 181/213 (84.98%), Postives = 198/213 (92.96%), Query Frame = 2
Query:   80 MRGGSLWQLGQSITRRLALADKKTIARRHFASDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFR 718
            MRGG LWQLGQSITRRL  +DKKTI RR +AS+A+ LKKT L+DFHVA+GGKMVPFAGWSMPIQYKDSIM+ST+NCR+NGSLFDVSHMCGLSLKGKDCV FLEKLV+ADVAGLAPGTG+LTVFTNE GG+IDDSVITKV DDHIYLVVNAGCRDKDLAHIE HMK+F AKGGDVSWHI+DERSLLALQGPLA   LQHLTK+DLSK+YFG+FR
Sbjct:    1 MRGG-LWQLGQSITRRLGQSDKKTIVRRCYASEAD-LKKTVLYDFHVAHGGKMVPFAGWSMPIQYKDSIMDSTINCRENGSLFDVSHMCGLSLKGKDCVAFLEKLVVADVAGLAPGTGSLTVFTNEKGGAIDDSVITKVTDDHIYLVVNAGCRDKDLAHIEEHMKAFKAKGGDVSWHIYDERSLLALQGPLAGSTLQHLTKEDLSKMYFGDFR 211          
BLAST of CN184383 vs. ExPASy Swiss-Prot
Match: GCST_PEA (Aminomethyltransferase, mitochondrial OS=Pisum sativum GN=GDCST PE=1 SV=2)

HSP 1 Score: 370.163 bits (949), Expect = 6.319e-102
Identity = 187/214 (87.38%), Postives = 198/214 (92.52%), Query Frame = 2
Query:   80 MRGGSLWQLGQSITRRLALA-DKKTIARRHFASDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYFGEFR 718
            MRGG LWQLGQSITRRLA   DKK +ARR FA+++E LKKT L+DFHVA+GGKMVPFAGWSMPIQYKDSIM+STLNCRQNGSLFDVSHMCGLSLKGKD V FLEKLVIADVA LA GTGTLTVFTNE GG+IDDSVITKV DDH+YLVVNAGCRDKDLAHIE HMK+F AKGGDVSWHIHDERSLLALQGPLAAPVLQHLTK+DLSKLYFGEFR
Sbjct:    1 MRGG-LWQLGQSITRRLANGGDKKAVARRCFATESE-LKKTVLYDFHVAHGGKMVPFAGWSMPIQYKDSIMDSTLNCRQNGSLFDVSHMCGLSLKGKDVVSFLEKLVIADVAALAHGTGTLTVFTNEKGGAIDDSVITKVTDDHLYLVVNAGCRDKDLAHIEEHMKAFKAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKEDLSKLYFGEFR 212          
BLAST of CN184383 vs. ExPASy Swiss-Prot
Match: GCST_CHICK (Aminomethyltransferase, mitochondrial OS=Gallus gallus GN=AMT PE=2 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 7.101e-45
Identity = 93/188 (49.47%), Postives = 121/188 (64.36%), Query Frame = 2
Query:  143 KKTIARRHFASDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYF 706
            +  +ARRH +S  E LK+T L   H A GG+MVPFAGWS+P+QY    +ES L+ R++ SLFDVSHM    + G+D V FLE LV+ D+A L PG GTLT+ TNE G  +DD ++T   +DH+Y+V NAGC DKD A +E       A GGDV   +  +R+   +QGP  A VLQ    DDL+KL F
Sbjct:    7 RAALARRHLSSAPEGLKQTPLDALHRARGGRMVPFAGWSLPVQYGRGHLESHLHTRRHCSLFDVSHMLQTRVYGRDRVRFLESLVVGDIAELRPGQGTLTLLTNERGDIVDDLIVTNTAEDHLYVVSNAGCADKDRAVMEGRAAELRAAGGDVHLEVSGQRA-AGVQGPSMAQVLQAGLPDDLTKLTF 193          
BLAST of CN184383 vs. ExPASy Swiss-Prot
Match: GCST_MOUSE (Aminomethyltransferase, mitochondrial OS=Mus musculus GN=Amt PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.582e-44
Identity = 91/185 (49.19%), Postives = 127/185 (68.65%), Query Frame = 2
Query:  152 IARRHFASDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYF 706
            +  R  +S  + L++T L+DFH+A+GGKMV FAGWS+P+QY+DS ++S L+ R++ SLFDVSHM    + G D V  LE +V+ D+A L P  GTL++FTNE GG +DD +++   + H+Y+V NAGCRDKDLA ++  +K F  +G DV   +  E +LLALQGP A  VLQ    DD+ KL F
Sbjct:   21 VQSRPLSSVQDVLRRTPLYDFHLAHGGKMVAFAGWSLPVQYRDSHVDSHLHTRRHCSLFDVSHMLQTKIFGCDRVKLLESVVVGDIAELRPNQGTLSLFTNEAGGILDDLIVSNTSEGHLYVVSNAGCRDKDLALMQDKVKEFQNRGLDVGLEV-VENALLALQGPTATQVLQAGVTDDMKKLPF 204          
BLAST of CN184383 vs. ExPASy Swiss-Prot
Match: GCST_BOVIN (Aminomethyltransferase, mitochondrial OS=Bos taurus GN=AMT PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.698e-44
Identity = 90/173 (52.02%), Postives = 120/173 (69.36%), Query Frame = 2
Query:  188 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLLALQGPLAAPVLQHLTKDDLSKLYF 706
            L +T L+DFH+A+GGKMV FAGWS+P+QY+DS + S L+ RQ+ SLFDVSHM    + G D V  +E LV+ D+A L P  GTL++FTNE GG +DD ++T   + H+Y+V NAGCR+KDL  ++  ++    KG DV+  + D  +LLALQGP AA VLQ    DDL KL F
Sbjct:   27 LHRTPLYDFHLAHGGKMVAFAGWSLPVQYRDSHVNSHLHTRQHCSLFDVSHMLQTKIFGCDRVKLMESLVVGDIAELKPNQGTLSLFTNEAGGILDDLIVTSASEGHLYVVSNAGCREKDLTLMQDKVRELQNKGSDVALEVMD-NALLALQGPTAAQVLQAGVADDLRKLPF 198          
The following BLAST results are available for this feature:
BLAST of CN184383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 331
Match NameE-valueIdentityDescription
GCST_ARATH2.479e-10686.38Aminomethyltransferase, mitochondrial OS=Arabidops... [more]
GCST_SOLTU1.607e-10588.26Aminomethyltransferase, mitochondrial OS=Solanum t... [more]
GCST_MESCR3.580e-10585.38Aminomethyltransferase, mitochondrial OS=Mesembrya... [more]
GCST_FLATR5.170e-10486.38Aminomethyltransferase, mitochondrial OS=Flaveria ... [more]
GCST_FLAPR6.752e-10486.38Aminomethyltransferase, mitochondrial OS=Flaveria ... [more]
GCST_FLAAN3.705e-10284.98Aminomethyltransferase, mitochondrial OS=Flaveria ... [more]
GCST_PEA6.319e-10287.38Aminomethyltransferase, mitochondrial OS=Pisum sat... [more]
GCST_CHICK7.101e-4549.47Aminomethyltransferase, mitochondrial OS=Gallus ga... [more]
GCST_MOUSE1.582e-4449.19Aminomethyltransferase, mitochondrial OS=Mus muscu... [more]
GCST_BOVIN2.698e-4452.02Aminomethyltransferase, mitochondrial OS=Bos tauru... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005G14_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005G14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184383 ID=CN184383; Name=CN184383; organism=Citrus sinensis; type=EST; length=719bp
GAGGCTCTTTCGGGCTCCCAGATTTGCTTGTTTCTGAGATAAAGAAGAAA
ACCCCATCTCTATATTTATATCGAATAAAATGAGAGGAGGGAGTCTGTGG
CAGCTTGGACAATCGATCACCCGTCGTTTGGCTCTGGCTGATAAGAAGAC
TATAGCTCGTAGACACTTTGCCTCAGATGCTGAAAACCTGAAAAAAACTG
CCCTTCATGACTTTCATGTGGCTAATGGTGGAAAGATGGTTCCATTTGCT
GGATGGAGCATGCCTATTCAGTACAAGGACTCAATTATGGAATCTACTTT
GAATTGTCGGCAGAATGGTAGTCTCTTTGATGTCTCCCATATGTGTGGGC
TGAGCCTCAAAGGGAAGGATTGCGTCCCTTTCCTTGAGAAGCTTGTGATC
GCTGATGTTGCTGGACTTGCCCCAGGAACTGGGACTCTTACAGTCTTTAC
AAATGAAAATGGGGGTTCAATTGATGATTCGGTTATTACCAAGGTGAAGG
ATGATCACATATACCTTGTTGTGAATGCTGGCTGCAGGGATAAGGATCTT
GCTCACATTGAGGCACATATGAAGAGTTTCACAGCCAAAGGTGGGGATGT
CTCGTGGCACATCCATGATGAGAGATCTCTTCTTGCCCTTCAGGGCCCCC
TTGCTGCCCCAGTTCTTCAACACCTGACAAAAGATGACTTGAGCAAGTTA
TACTTCGGGGAGTTCCGAA
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