CN184380

Overview
NameCN184380
Unique NameCN184380
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length579
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184380 vs. ExPASy Swiss-Prot
Match: ARD3_ARATH (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3 OS=Arabidopsis thaliana GN=ARD3 PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 7.032e-49
Identity = 87/107 (81.31%), Postives = 97/107 (90.65%), Query Frame = -1
Query:  259 NFFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVWTPFNRPHDHLPARKGYVQNFLQKEAGDSPIDAAA 579
            +FFEEHLHTDEEIRYCVAGSGYFDVRDRNE WIR+WVKKGGMIVLPAG YHRFT+D+DNYIKAMRLFVG+PVWTP+NRPHDHLPARK Y+ NF++   G   IDA+A
Sbjct:   94 SFFEEHLHTDEEIRYCVAGSGYFDVRDRNEAWIRVWVKKGGMIVLPAGIYHRFTVDSDNYIKAMRLFVGEPVWTPYNRPHDHLPARKEYIDNFVKVNEG-GVIDASA 199          
BLAST of CN184380 vs. ExPASy Swiss-Prot
Match: ARD2_ARATH (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 OS=Arabidopsis thaliana GN=ARD2 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.267e-46
Identity = 81/94 (86.17%), Postives = 89/94 (94.68%), Query Frame = -1
Query:  298 NFFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVWTPFNRPHDHLPARKGYVQNFL 579
            +FFEEHLHTDEEIRYCVAG+GYFDVRDRNE WIR+ VKKGGMIVLPAG YHRFT+D+DNYIKAMRLFVG+PVWTP+NRPHDHLPARK YV NF+
Sbjct:   94 SFFEEHLHTDEEIRYCVAGTGYFDVRDRNEAWIRVLVKKGGMIVLPAGIYHRFTVDSDNYIKAMRLFVGEPVWTPYNRPHDHLPARKEYVDNFM 187          
BLAST of CN184380 vs. ExPASy Swiss-Prot
Match: ARD2_ORYSJ (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 OS=Oryza sativa subsp. japonica GN=ARD2 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 4.717e-45
Identity = 80/105 (76.19%), Postives = 93/105 (88.57%), Query Frame = -1
Query:  265 NFFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVWTPFNRPHDHLPARKGYVQNFLQKEAGDSPIDA 579
            NFFEEHLHTDEEIRYC+ GSGYFDVRD+N++WIR+ VKKGGMIVLPAG YHRFTLD+DNYIKAMRLFVG+PVWTP+NRPHDHLPARK YV+  + +  G   ++A
Sbjct:   94 NFFEEHLHTDEEIRYCLEGSGYFDVRDQNDQWIRVAVKKGGMIVLPAGMYHRFTLDSDNYIKAMRLFVGEPVWTPYNRPHDHLPARKEYVEKIINR-GGTQAVEA 197          
BLAST of CN184380 vs. ExPASy Swiss-Prot
Match: ARD2_ORYSI (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 OS=Oryza sativa subsp. indica GN=ARD2 PE=2 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 4.717e-45
Identity = 80/105 (76.19%), Postives = 93/105 (88.57%), Query Frame = -1
Query:  265 NFFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVWTPFNRPHDHLPARKGYVQNFLQKEAGDSPIDA 579
            NFFEEHLHTDEEIRYC+ GSGYFDVRD+N++WIR+ VKKGGMIVLPAG YHRFTLD+DNYIKAMRLFVG+PVWTP+NRPHDHLPARK YV+  + +  G   ++A
Sbjct:   94 NFFEEHLHTDEEIRYCLEGSGYFDVRDQNDQWIRVAVKKGGMIVLPAGMYHRFTLDSDNYIKAMRLFVGEPVWTPYNRPHDHLPARKEYVEKIINR-GGTQAVEA 197          
BLAST of CN184380 vs. ExPASy Swiss-Prot
Match: ARD1_ORYSJ (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 OS=Oryza sativa subsp. japonica GN=ARD1 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 6.161e-45
Identity = 79/104 (75.96%), Postives = 92/104 (88.46%), Query Frame = -1
Query:  268 NFFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVWTPFNRPHDHLPARKGYVQNFLQKEAGDSPID 579
            +FFEEHLHTDEEIRYC+ GSGYFDVRD+N++WIRI +KKGGMIVLPAG YHRFTLDTDNYIKAMRLFVGDPVWTP+NRPHDHLPARK ++   L+ E  +  ++
Sbjct:   94 SFFEEHLHTDEEIRYCLEGSGYFDVRDQNDQWIRIALKKGGMIVLPAGMYHRFTLDTDNYIKAMRLFVGDPVWTPYNRPHDHLPARKEFLAKLLKSEGENQAVE 197          
BLAST of CN184380 vs. ExPASy Swiss-Prot
Match: ARD1_ORYSI (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 OS=Oryza sativa subsp. indica GN=ARD1 PE=1 SV=2)

HSP 1 Score: 180.259 bits (456), Expect = 6.161e-45
Identity = 79/104 (75.96%), Postives = 92/104 (88.46%), Query Frame = -1
Query:  268 NFFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVWTPFNRPHDHLPARKGYVQNFLQKEAGDSPID 579
            +FFEEHLHTDEEIRYC+ GSGYFDVRD+N++WIRI +KKGGMIVLPAG YHRFTLDTDNYIKAMRLFVGDPVWTP+NRPHDHLPARK ++   L+ E  +  ++
Sbjct:   94 SFFEEHLHTDEEIRYCLEGSGYFDVRDQNDQWIRIALKKGGMIVLPAGMYHRFTLDTDNYIKAMRLFVGDPVWTPYNRPHDHLPARKEFLAKLLKSEGENQAVE 197          
BLAST of CN184380 vs. ExPASy Swiss-Prot
Match: ARD1_ARATH (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 OS=Arabidopsis thaliana GN=ARD1 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.051e-44
Identity = 81/106 (76.42%), Postives = 92/106 (86.79%), Query Frame = -1
Query:  259 FFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVWTPFNRPHDHLPARKGYVQNFLQKEAGDSPIDAAA 576
            FFEEHLH DEEIRYC+AGSGYFDVRD N+ WIR+WVKKGG+IV PAG YHRFT+D+DNY+KAMRLFVG PVWT +NRPHDHLPARK Y++ FL K  GD  IDA+A
Sbjct:   95 FFEEHLHIDEEIRYCLAGSGYFDVRDLNDIWIRVWVKKGGLIVFPAGIYHRFTVDSDNYMKAMRLFVGGPVWTAYNRPHDHLPARKAYMKKFL-KVIGDRNIDASA 199          
BLAST of CN184380 vs. ExPASy Swiss-Prot
Match: ARD3_ORYSJ (Putative 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3 OS=Oryza sativa subsp. japonica GN=ARD3 PE=3 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 9.527e-38
Identity = 66/90 (73.33%), Postives = 78/90 (86.67%), Query Frame = -1
Query:  307 FFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVWTPFNRPHDHLPARKGYVQ 576
            FFEEHLHTDEE+RYC+ GSGYFDVRD N+KW+R+ V+KG +IV+PAG YHRFTLDT+NYIK MRLF G P WT +NRPHDHLP RK Y++
Sbjct:   97 FFEEHLHTDEEVRYCLDGSGYFDVRDENDKWVRVSVRKGALIVVPAGIYHRFTLDTNNYIKTMRLFSGGPDWTAYNRPHDHLPERKKYLE 186          
BLAST of CN184380 vs. ExPASy Swiss-Prot
Match: ARD4_ARATH (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 4 OS=Arabidopsis thaliana GN=ARD4 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.620e-37
Identity = 65/96 (67.71%), Postives = 78/96 (81.25%), Query Frame = -1
Query:  292 NFFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVWTPFNRPHDHLPARKGYVQNFLQK 579
            NFF EH+H DEEIRYC+AGSGYFDVRD++++WIRIW++ G +IVLPAG YHRFTLD  NYIK MRLFVG+PVWTP+NRP +  P RK Y+     K
Sbjct:   84 NFFTEHIHKDEEIRYCLAGSGYFDVRDKDDRWIRIWMQPGDLIVLPAGIYHRFTLDASNYIKLMRLFVGEPVWTPYNRPQEEHPVRKKYIHGLTYK 179          
BLAST of CN184380 vs. ExPASy Swiss-Prot
Match: MTND_XENLA (1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase OS=Xenopus laevis GN=adi1 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 6.827e-36
Identity = 67/94 (71.28%), Postives = 79/94 (84.04%), Query Frame = -1
Query:  295 FFEEHLHTDEEIRYCVAGSGYFDVRDRNEKWIRIWVKKGGMIVLPAGCYHRFTLDTDNYIKAMRLFVGDPVWTPFNRPHDHLPARKGYVQNFLQ 576
            F+EEHLH D+EIRY + GSGYFDVRD+ +KWIRI+++KG MI LPAG YHRFTLD +NY+KAMRLFVGDPVWTPFNRP D+  AR+ YVQ   Q
Sbjct:   84 FYEEHLHLDDEIRYILEGSGYFDVRDQKDKWIRIFMQKGDMITLPAGIYHRFTLDENNYVKAMRLFVGDPVWTPFNRPADNCEAREKYVQFLAQ 177          
The following BLAST results are available for this feature:
BLAST of CN184380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
ARD3_ARATH7.032e-4981.311,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
ARD2_ARATH3.267e-4686.171,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
ARD2_ORYSJ4.717e-4576.191,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
ARD2_ORYSI4.717e-4576.191,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
ARD1_ORYSJ6.161e-4575.961,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
ARD1_ORYSI6.161e-4575.961,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
ARD1_ARATH1.051e-4476.421,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
ARD3_ORYSJ9.527e-3873.33Putative 1,2-dihydroxy-3-keto-5-methylthiopentene ... [more]
ARD4_ARATH3.620e-3767.711,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]
MTND_XENLA6.827e-3671.281,2-dihydroxy-3-keto-5-methylthiopentene dioxygena... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005G13_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005G13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184380 ID=CN184380; Name=CN184380; organism=Citrus sinensis; type=EST; length=579bp
TTTTTTACTATATATATTCAATATTAGAATGTATTATAATATATATGGTA
CTCTTGTATACAGAAAATGAAGGACACAGATATTCGTGGTGAGTTTACAG
CAGTGGCTGCAACCAAGCAAGCAGAGATGCTACACAAGCAATTAAACCAC
ACAGGTAACTCCAGGAGCCTCAGACACAGACAAACCATATAAACAGAAGT
TTCTTTATTTATTAAAGCCAGTACTATTGATCCAATGAGCAAGGAATTGC
ACAAATTACGCAGCAGCATCGATAGGGCTGTCACCAGCTTCCTTCTGCAA
GAAATTTTGAACATATCCCTTCCTTGCGGGTAAATGATCATGGGGACGGT
TGAATGGAGTCCAAACGGGATCACCTACAAACAGACGCATAGCCTTGATA
TAGTTGTCTGTATCCAAAGTAAAGCGATGGTAACATCCAGCAGGTAAAAC
AATCATTCCTCCTTTCTTTACCCATATGCGAATCCATTTTTCATTACGGT
CCCTGACATCAAAGTAACCACTTCCTGCCACACAGTAGCGGATCTCTTCA
TCTGTATGAAGATGTTCTTCGAAAAAGTT
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